FiT-DB / Search/ Help/ Sample detail

Os06g0326400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pyrophosphate-dependent phosphofructokinase PfpB family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.7 (0.0308) R2 : 0.638
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.2 (0.0797) R2dC : 0.611 R2C : 0.604
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.372 (0.0648) R2dN8 : 0.0338 R2N8 : 0.027
σ : 0.58
deviance : 153.99
__
_____
C
peak time of C : 7.35
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
137.22 0.55 10.8 -1.29 2.2 0.549 1.16 -2.62 -0.0439 7.42 25.7 1402 -- --
143.89 0.559 10.7 -0.536 2.18 0.463 1.09 -- 0.137 7.39 25.5 1397 -- --
140.81 0.553 10.8 -1.28 2.21 0.545 -- -2.69 -0.0469 7.38 25.7 1449 -- --
147.16 0.565 10.7 -0.463 2.2 0.347 -- -- 0.192 7.4 25.56 1397 -- --
397.59 0.929 10.8 -1.04 -- 0.564 -- -2.03 0.0161 -- 25.55 1377 -- --
147.07 0.569 10.7 -0.369 2.21 -- 1.19 -- 0.336 7.37 -- -- -- --
150.88 0.575 10.7 -0.343 2.21 -- -- -- 0.334 7.34 -- -- -- --
399.74 0.935 10.7 -0.242 -- -0.321 -- -- 0.503 -- 25.56 1397 -- --
152.17 0.575 10.7 -- 2.2 0.235 -- -- 0.296 7.4 25.55 1378 -- --
410.02 0.946 10.7 -0.306 -- -- -- -- 0.371 -- -- -- -- --
153.99 0.58 10.7 -- 2.2 -- -- -- 0.372 7.35 -- -- -- --
401.27 0.936 10.7 -- -- -0.334 -- -- 0.535 -- 25.56 1397 -- --
412.49 0.948 10.7 -- -- -- -- -- 0.405 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 129.61 precipitation 0.1 270 > th dose independent rect. 2 2
2 129.61 precipitation 0.1 270 > th dose dependent rect. 2 2
3 129.71 humidity 90.0 720 > th dose dependent rect. 20 5
7 131.05 radiation 1.0 1440 < th dose independent rect. 11 1
8 131.05 radiation 1.0 1440 < th dose dependent rect. 11 1
16 131.91 wind 1.0 90 < th dose independent rect. 24 1
21 132.39 wind 1.0 90 < th dose dependent rect. 24 1
23 132.58 radiation 1.0 1440 > th dose independent rect. 14 1
26 132.74 precipitation 0.1 270 > th dose independent rect. 24 4
30 132.90 radiation 1.0 1440 < th dose independent rect. 14 1
31 132.90 radiation 1.0 1440 < th dose dependent rect. 14 1
46 133.45 precipitation 0.1 270 > th dose independent rect. 20 8
58 133.78 radiation 1.0 1440 < th dose independent rect. 8 7
59 133.78 radiation 1.0 1440 < th dose dependent rect. 8 7
71 134.01 wind 1.0 43200 > th dose independent rect. 16 3
74 134.07 wind 1.0 43200 < th dose independent rect. 16 2
75 134.07 wind 1.0 43200 < th dose independent rect. 15 4
80 134.20 wind 1.0 43200 < th dose dependent rect. 16 2
85 134.33 humidity 90.0 43200 > th dose dependent rect. 23 1
92 134.45 humidity 70.0 720 > th dose dependent rect. 20 1
97 134.56 humidity 80.0 720 > th dose independent rect. 20 1
99 134.57 humidity 80.0 720 < th dose dependent rect. 19 1
106 134.66 humidity 50.0 720 > th dose dependent rect. 19 7
113 134.77 humidity 80.0 720 < th dose independent rect. 19 1
127 134.94 humidity 80.0 43200 > th dose dependent rect. 12 17
143 135.03 temperature 15.0 720 > th dose dependent rect. 2 3
144 135.04 radiation 40.0 43200 < th dose dependent rect. 19 11
146 135.07 temperature 25.0 1440 < th dose independent rect. 21 1
158 135.14 humidity 90.0 43200 > th dose independent rect. 20 9
159 135.14 wind 1.0 43200 < th dose dependent rect. 7 1
170 135.18 radiation 40.0 43200 < th dose dependent rect. 3 3
171 135.18 radiation 40.0 43200 < th dose dependent rect. 22 8
176 135.20 temperature 25.0 1440 > th dose independent rect. 21 1
180 135.21 radiation 10.0 43200 < th dose dependent rect. 4 2
183 135.21 radiation 40.0 43200 < th dose dependent rect. 24 6
188 135.22 radiation 10.0 43200 < th dose dependent rect. 24 6
226 135.33 humidity 90.0 43200 > th dose dependent rect. 23 4
228 135.34 humidity 80.0 43200 > th dose dependent sin 14 NA
233 135.37 humidity 80.0 43200 > th dose dependent rect. 17 10
241 135.40 wind 1.0 43200 < th dose dependent rect. 13 6
242 135.41 radiation 10.0 43200 < th dose independent rect. 5 2
248 135.42 radiation 10.0 43200 < th dose independent rect. 20 11
253 135.43 radiation 10.0 43200 < th dose independent rect. 24 7
275 135.49 radiation 1.0 43200 > th dose dependent rect. 4 2
294 135.53 humidity 90.0 43200 > th dose dependent rect. 2 1
297 135.54 radiation 40.0 43200 < th dose independent rect. 19 14
298 135.54 humidity 90.0 720 > th dose dependent sin 16 NA
301 135.55 humidity 80.0 43200 > th dose dependent rect. 18 8
306 135.57 radiation 40.0 43200 < th dose independent rect. 7 2
307 135.57 radiation 40.0 43200 < th dose independent rect. 5 4
310 135.57 radiation 40.0 43200 < th dose independent rect. 24 9
311 135.57 radiation 40.0 43200 < th dose independent rect. 22 11
331 135.60 humidity 90.0 43200 > th dose independent rect. 23 1
343 135.63 humidity 90.0 43200 < th dose independent rect. 20 8
348 135.66 humidity 90.0 43200 < th dose independent rect. 19 10
354 135.67 humidity 80.0 43200 > th dose dependent rect. 19 6
359 135.68 radiation 30.0 43200 > th dose dependent rect. 16 17
362 135.71 radiation 30.0 43200 > th dose dependent rect. 7 2
392 135.78 radiation 10.0 43200 < th dose independent rect. 16 15
395 135.79 humidity 80.0 1440 > th dose independent rect. 12 1
407 135.82 humidity 80.0 720 < th dose independent rect. 18 3
433 135.94 humidity 90.0 43200 < th dose independent rect. 23 2
445 135.97 wind 1.0 43200 < th dose dependent rect. 15 4
519 136.20 humidity 80.0 43200 > th dose dependent rect. 21 18
520 136.21 radiation 1.0 14400 > th dose independent rect. 9 2
521 136.21 radiation 1.0 14400 < th dose independent rect. 9 2
560 136.27 humidity 70.0 720 > th dose independent rect. 18 8
565 136.28 radiation 30.0 43200 > th dose independent rect. 7 1
604 136.37 humidity 90.0 43200 > th dose independent rect. 4 2
667 136.51 humidity 80.0 43200 > th dose independent rect. 3 13
669 136.51 radiation 40.0 43200 < th dose independent rect. 14 19
676 136.53 humidity 80.0 1440 < th dose independent rect. 12 1
685 136.54 humidity 90.0 43200 > th dose independent rect. 14 15
707 136.56 precipitation 0.1 720 < th dose independent rect. 2 18
710 136.56 precipitation 0.1 720 < th dose dependent rect. 2 18
723 136.60 radiation 10.0 43200 < th dose independent rect. 16 9
729 136.61 radiation 10.0 43200 < th dose independent rect. 16 4
743 136.62 humidity 90.0 43200 > th dose dependent rect. 4 1
744 136.62 humidity 80.0 1440 > th dose dependent rect. 12 1
753 136.64 humidity 80.0 43200 > th dose independent rect. 2 16
760 136.66 radiation 20.0 43200 < th dose independent rect. 16 1
792 136.71 radiation 20.0 1440 < th dose dependent rect. 12 1
800 136.72 humidity 80.0 43200 < th dose independent rect. 2 15
816 136.76 temperature 20.0 720 > th dose independent rect. 2 3
828 136.78 radiation 10.0 43200 < th dose independent sin 12 NA
836 136.79 humidity 80.0 43200 < th dose independent rect. 1 17
842 136.80 humidity 90.0 43200 > th dose independent sin 12 NA
857 136.82 radiation 1.0 1440 < th dose dependent rect. 11 16
865 136.83 radiation 1.0 1440 < th dose dependent rect. 11 11
901 136.89 humidity 90.0 43200 < th dose independent rect. 14 15
912 136.91 radiation 1.0 14400 < th dose dependent rect. 9 1
917 136.92 wind 7.0 720 < th dose independent rect. 17 12
956 136.97 humidity 90.0 43200 < th dose independent sin 11 NA
958 136.97 humidity 80.0 43200 < th dose independent rect. 3 13
963 136.97 humidity 80.0 43200 > th dose dependent sin 7 NA
970 136.98 radiation 20.0 1440 < th dose dependent rect. 12 3