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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0325700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.76 (0.0193) R2 : 0.0107
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0903 (0.0407) R2dN8 : 0.0138 R2N8 : 0.0107
σ : 0.364
deviance : 60.74
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
52.95 0.339 2.76 0.0334 0.0142 0.976 0.198 2.47 0.103 18.6 1015 10 -- --
53.81 0.342 2.76 0.0383 0.0137 1.67 0.226 -- 0.108 19.5 1016 11 -- --
53.01 0.339 2.76 0.0433 0.0228 1.02 -- 2.48 0.104 21.5 1012 2 -- --
53.95 0.342 2.76 0.0336 0.0146 1.69 -- -- 0.108 19.5 1016 11 -- --
53.04 0.339 2.76 0.0414 -- 1.01 -- 2.48 0.104 -- 1012 2 -- --
60.22 0.364 2.76 0.0701 0.0509 -- 0.267 -- 0.0975 21.7 -- -- -- --
60.48 0.364 2.76 0.0593 0.0507 -- -- -- 0.0966 22.9 -- -- -- --
53.97 0.342 2.76 0.0337 -- 1.69 -- -- 0.108 -- 1016 11 -- --
53.98 0.342 2.76 -- 0.015 1.69 -- -- 0.104 20.6 1016 11 -- --
60.64 0.364 2.76 0.0604 -- -- -- -- 0.097 -- -- -- -- --
60.57 0.364 2.77 -- 0.0512 -- -- -- 0.09 23 -- -- -- --
54 0.342 2.76 -- -- 1.7 -- -- 0.104 -- 1016 11 -- --
60.74 0.364 2.76 -- -- -- -- -- 0.0903 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 50.05 atmosphere 1015 30 < th dose independent rect. 21 23
4 52.48 humidity 50 720 < th dose dependent rect. 12 1
5 52.50 humidity 50 1440 < th dose dependent rect. 11 3
25 52.64 atmosphere 1015 720 < th dose independent rect. 17 16
27 52.66 atmosphere 1015 1440 > th dose dependent rect. 15 9
29 52.67 atmosphere 1015 1440 > th dose dependent rect. 21 3
32 52.67 atmosphere 1015 1440 > th dose dependent rect. 17 7
37 52.68 atmosphere 1015 1440 > th dose dependent rect. 19 5
115 52.70 atmosphere 1015 1440 > th dose independent rect. 22 4
127 52.71 humidity 50 1440 < th dose independent rect. 9 1
169 52.71 humidity 50 1440 < th dose dependent rect. 9 1
210 52.73 atmosphere 1015 1440 > th dose dependent sin 12 NA
212 52.76 atmosphere 1015 1440 < th dose independent rect. 22 9
215 52.76 atmosphere 1015 30 < th dose independent rect. 3 23
217 52.78 atmosphere 1015 1440 < th dose independent rect. 22 4
222 52.80 atmosphere 1015 1440 < th dose independent rect. 22 2
246 52.83 atmosphere 1015 720 < th dose independent sin 2 NA
247 52.83 atmosphere 1015 720 > th dose independent rect. 24 1
267 52.85 atmosphere 1015 720 > th dose independent sin 3 NA
269 52.85 atmosphere 1015 30 < th dose independent rect. 9 23
272 52.86 atmosphere 1015 720 > th dose dependent rect. 24 1
329 52.87 atmosphere 1015 720 > th dose dependent sin 3 NA
367 52.91 atmosphere 1015 720 < th dose independent rect. 13 16
380 52.94 atmosphere 1015 10 < th dose independent sin 7 NA
386 52.94 atmosphere 1015 10 < th dose independent sin 18 NA
397 52.94 atmosphere 1015 720 < th dose independent rect. 17 8
402 52.95 atmosphere 1015 10 > th dose independent sin 7 NA
498 52.95 atmosphere 1015 10 > th dose independent no NA NA
515 52.95 atmosphere 1015 10 < th dose independent no NA NA
519 52.95 atmosphere 1015 270 > th dose independent rect. 20 1
525 52.95 atmosphere 1015 10 > th dose independent rect. 23 1