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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0325200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Major facilitator superfamily protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.4 (0.0296) R2 : 0.00022
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0197 (0.0623) R2dN8 : 0.000284 R2N8 : 0.00022
σ : 0.557
deviance : 142.46
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
106.68 0.485 3.41 -0.125 0.279 1.83 -0.604 -12.2 -0.111 6.75 1.239 95 2.02 0.927
113.93 0.497 3.42 0.00137 0.332 1.97 -0.703 -- -0.13 6.57 1.041 78 2.13 0.917
107.53 0.483 3.41 -0.136 0.272 1.93 -- -13.1 -0.11 6.97 1.2 93 2.03 0.921
111.1 0.491 3.42 0.0158 0.293 2.4 -- -- -0.126 6.69 0.6461 76 2.16 0.911
111.46 0.492 3.41 -0.135 -- 1.98 -- -12.7 -0.1 -- 1.2 92 2.03 0.909
132.88 0.54 3.4 -0.00269 0.38 -- -0.967 -- -0.0322 5.73 -- -- -- --
135.17 0.544 3.39 -0.00811 0.375 -- -- -- -0.0281 5.83 -- -- -- --
113.9 0.497 3.42 0.0143 -- 3.15 -- -- -0.122 -- 0.5836 58 2.15 0.949
109.26 0.487 3.4 -- 0.283 3.49 -- -- -0.101 7.01 0.5806 69 2.19 0.9
142.46 0.558 3.4 0.00338 -- -- -- -- -0.0193 -- -- -- -- --
135.18 0.544 3.39 -- 0.375 -- -- -- -0.0272 5.83 -- -- -- --
113.38 0.496 3.42 -- -- 3.69 -- -- -0.12 -- 0.5762 69 2.19 0.904
142.46 0.557 3.4 -- -- -- -- -- -0.0197 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 107.90 atmosphere 1005.0 10 > th dose independent rect. 2 2
2 107.93 atmosphere 1005.0 90 > th dose independent rect. 2 1
4 108.45 wind 1.0 90 < th dose dependent rect. 2 1
5 108.91 wind 1.0 90 < th dose independent rect. 2 1
6 110.96 atmosphere 1000.0 10 > th dose dependent rect. 2 2
7 111.10 atmosphere 1000.0 90 > th dose dependent rect. 2 1
9 111.39 wind 5.0 90 < th dose dependent rect. 2 1
14 112.55 wind 5.0 90 < th dose independent rect. 2 1
19 113.27 temperature 10.0 90 > th dose dependent rect. 2 1
20 113.39 atmosphere 995.0 90 > th dose independent rect. 3 23
27 114.08 precipitation 0.1 90 < th dose independent rect. 2 1
28 114.08 precipitation 0.1 90 < th dose dependent rect. 2 1
30 114.09 temperature 10.0 90 > th dose independent rect. 2 1
32 114.09 temperature 30.0 90 < th dose independent rect. 2 1
33 114.09 humidity 50.0 90 > th dose independent rect. 2 1
36 114.09 atmosphere 995.0 90 > th dose independent rect. 2 1
37 114.09 atmosphere 1010.0 90 < th dose independent rect. 2 1
39 114.09 radiation 1.0 90 < th dose independent rect. 2 1
44 114.09 temperature 10.0 90 > th dose independent rect. 3 23
45 114.09 radiation 1.0 90 < th dose dependent rect. 2 1
55 114.89 precipitation 0.1 90 < th dose independent rect. 3 23
56 114.89 precipitation 0.1 90 < th dose dependent rect. 3 23
57 114.96 humidity 50.0 90 > th dose dependent rect. 2 1
72 116.32 atmosphere 1000.0 10 > th dose independent rect. 4 22
74 116.45 wind 9.0 90 < th dose independent rect. 3 23
82 116.83 precipitation 0.1 10 < th dose independent rect. 2 2
83 116.83 precipitation 0.1 10 < th dose dependent rect. 2 2
86 117.11 temperature 25.0 10 < th dose independent rect. 2 2
90 117.16 temperature 10.0 10 > th dose independent rect. 2 2
93 117.16 humidity 50.0 10 > th dose independent rect. 2 2
96 117.16 atmosphere 995.0 10 > th dose independent rect. 2 2
97 117.16 atmosphere 1010.0 10 < th dose independent rect. 2 2
99 117.16 radiation 1.0 10 < th dose independent rect. 2 2
104 117.16 temperature 10.0 10 > th dose independent rect. 4 22
105 117.16 radiation 1.0 10 < th dose dependent rect. 2 2
114 117.39 precipitation 0.1 10 < th dose independent rect. 4 22
115 117.39 precipitation 0.1 10 < th dose dependent rect. 4 22
116 117.44 humidity 90.0 90 < th dose independent rect. 2 1
118 117.63 radiation 1.0 43200 < th dose dependent rect. 3 1
146 117.84 wind 9.0 10 < th dose independent rect. 4 22
147 117.95 humidity 50.0 10 > th dose dependent rect. 2 2
150 118.19 temperature 30.0 90 < th dose dependent rect. 2 1
152 118.21 humidity 50.0 30 > th dose independent rect. 4 22
157 118.46 radiation 1.0 4320 < th dose dependent rect. 3 1
172 118.58 wind 9.0 1440 < th dose independent rect. 3 1
173 118.58 temperature 10.0 1440 > th dose independent rect. 3 1
176 118.58 temperature 30.0 1440 < th dose independent rect. 3 1
180 118.58 humidity 50.0 1440 > th dose independent rect. 3 1
189 118.58 atmosphere 995.0 1440 > th dose independent rect. 3 1
190 118.58 radiation 1.0 1440 < th dose independent rect. 3 1
211 118.58 temperature 10.0 1440 > th dose independent rect. 4 23
226 118.74 atmosphere 1015.0 90 < th dose dependent rect. 2 1
291 119.45 radiation 10.0 30 < th dose dependent rect. 4 22
332 119.72 wind 1.0 30 > th dose independent rect. 2 1
346 119.89 wind 3.0 10 < th dose dependent rect. 2 6
358 120.17 atmosphere 1005.0 30 > th dose independent rect. 2 6
405 120.66 radiation 10.0 30 < th dose independent rect. 4 22
407 120.72 temperature 30.0 30 < th dose independent rect. 4 22
451 121.96 atmosphere 1015.0 10 < th dose independent rect. 4 22
463 122.20 humidity 80.0 10 < th dose independent rect. 6 2
467 122.23 wind 3.0 30 < th dose independent rect. 2 6
518 122.79 radiation 10.0 30 > th dose independent rect. 6 2
533 122.79 atmosphere 1000.0 30 > th dose dependent rect. 2 6
550 122.97 humidity 80.0 10 < th dose independent rect. 24 8
561 123.08 wind 7.0 4320 > th dose independent rect. 1 1
566 123.08 wind 7.0 4320 > th dose dependent rect. 1 1
595 123.12 wind 1.0 30 > th dose independent rect. 4 22
651 123.60 temperature 15.0 30 > th dose dependent rect. 2 6
658 123.66 atmosphere 995.0 30 > th dose dependent rect. 4 22
719 123.96 humidity 50.0 10 > th dose dependent rect. 4 22
724 124.04 temperature 25.0 10 > th dose independent rect. 7 1
725 124.04 wind 9.0 30 < th dose dependent rect. 4 22
729 124.10 temperature 20.0 30 > th dose independent rect. 2 6
730 124.11 atmosphere 995.0 720 > th dose independent rect. 23 16
733 124.13 radiation 20.0 10 < th dose dependent rect. 16 10
734 124.14 atmosphere 1000.0 30 > th dose independent rect. 8 18
738 124.17 radiation 10.0 30 < th dose independent rect. 16 10
785 124.37 radiation 10.0 30 < th dose independent rect. 14 12
795 124.44 radiation 20.0 10 < th dose dependent rect. 14 12
799 124.47 radiation 10.0 10 < th dose dependent rect. 10 16
800 124.47 radiation 10.0 10 < th dose dependent rect. 8 18
808 124.52 humidity 90.0 90 < th dose independent rect. 1 7
813 124.53 radiation 40.0 10 < th dose dependent rect. 14 12
829 124.62 precipitation 0.1 720 < th dose independent rect. 15 8
831 124.62 precipitation 0.1 720 < th dose dependent rect. 15 8
833 124.64 atmosphere 1000.0 10 > th dose independent rect. 16 10
841 124.69 temperature 10.0 720 > th dose independent rect. 15 8
842 124.69 temperature 10.0 720 > th dose independent rect. 23 16
860 124.78 wind 3.0 30 < th dose dependent rect. 2 11
905 124.89 radiation 1.0 10 < th dose dependent rect. 2 6
911 124.92 precipitation 0.1 30 < th dose independent rect. 2 6
912 124.92 precipitation 0.1 30 < th dose dependent rect. 2 6
913 124.93 humidity 50.0 30 > th dose independent rect. 8 18
925 124.97 wind 9.0 10 < th dose independent rect. 16 10
927 124.98 wind 9.0 1440 < th dose independent rect. 3 6
928 124.98 temperature 10.0 1440 > th dose independent rect. 3 6
931 124.98 humidity 50.0 1440 > th dose independent rect. 3 6
933 124.98 atmosphere 995.0 1440 > th dose independent rect. 3 6
934 124.98 temperature 10.0 1440 > th dose independent rect. 9 18
944 125.03 temperature 10.0 30 > th dose independent rect. 2 6
946 125.03 temperature 30.0 30 < th dose independent rect. 2 6
947 125.03 humidity 50.0 30 > th dose independent rect. 2 6
949 125.03 atmosphere 995.0 30 > th dose independent rect. 2 6
950 125.03 atmosphere 1015.0 30 < th dose independent rect. 2 6
951 125.03 temperature 10.0 30 > th dose independent rect. 8 18
960 125.06 precipitation 0.1 10 < th dose independent rect. 2 14
962 125.06 precipitation 0.1 10 < th dose dependent rect. 2 14
967 125.09 humidity 50.0 720 > th dose independent rect. 3 8
968 125.09 wind 9.0 30 < th dose independent rect. 8 18
969 125.09 precipitation 0.1 30 < th dose independent rect. 8 18
970 125.09 precipitation 0.1 30 < th dose dependent rect. 8 18
1000 125.18 humidity 50.0 10 > th dose independent rect. 16 10