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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0324400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Late embryogenesis abundant (LEA) group 1 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.01 (0.0381) R2 : 0.101
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.92 (0.55) R2dE : 0.1 R2E : 0.101
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0215 (0.0803) R2dN8 : 0.000359 R2N8 : 0.000598
σ : 0.716
deviance : 236.48
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 6.9
memory length : 82
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 23.3
open length of G : 1.62

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
233.01 0.717 3.02 0.0114 0.168 6.99 0.433 14.6 -0.0366 11.7 7.5 71 23.1 1.97
234.8 0.714 3.04 0.027 0.156 4.2 0.496 -- -0.0115 10.6 6.941 72 23.3 1.7
233.82 0.712 3.02 0.0309 0.166 7.09 -- 14.8 -0.0347 11.8 7.533 71 23 2
234.88 0.714 3.01 0.034 0.129 4.18 -- -- -0.0144 12 6.908 82 23.3 1.69
235.56 0.715 3.02 0.0331 -- 7.07 -- 15 -0.0351 -- 7.538 71 23 2
261.38 0.758 3.02 -0.0109 0.112 -- 0.4 -- -0.0565 10.8 -- -- -- --
262.04 0.758 3.02 0.00579 0.11 -- -- -- -0.0549 11.2 -- -- -- --
236.51 0.716 3.01 0.0295 -- 3.92 -- -- -0.0192 -- 6.9 83 23.3 1.7
234.81 0.714 3.02 -- 0.145 4.14 -- -- -0.0162 11.9 6.933 83 23.3 1.7
262.8 0.757 3.02 0.00313 -- -- -- -- -0.0559 -- -- -- -- --
262.04 0.757 3.02 -- 0.11 -- -- -- -0.0555 11.2 -- -- -- --
236.48 0.716 3.01 -- -- 3.92 -- -- -0.0215 -- 6.9 82 23.3 1.62
262.8 0.757 3.02 -- -- -- -- -- -0.0562 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 233.35 wind 7.0 90 > th dose dependent rect. 23 2
2 235.11 wind 7.0 90 > th dose independent rect. 23 2
7 244.30 temperature 30.0 10 > th dose independent rect. 10 1
9 245.21 radiation 1.0 90 < th dose independent rect. 8 6
10 245.21 radiation 1.0 90 < th dose dependent rect. 8 6
13 245.56 radiation 1.0 10 < th dose independent rect. 13 1
23 245.56 radiation 1.0 10 < th dose dependent rect. 13 1
39 246.45 wind 9.0 1440 > th dose independent rect. 22 4
47 246.45 wind 9.0 1440 > th dose dependent rect. 22 4
55 246.47 wind 9.0 1440 > th dose independent rect. 22 1
59 246.47 wind 9.0 1440 > th dose dependent rect. 22 1
63 246.63 wind 9.0 90 > th dose independent rect. 22 12
68 246.65 humidity 80.0 90 > th dose dependent rect. 12 1
69 246.66 wind 9.0 90 > th dose dependent rect. 22 12
121 246.79 humidity 80.0 90 > th dose independent rect. 12 1
139 246.90 temperature 20.0 90 < th dose independent rect. 8 1
160 247.32 wind 7.0 90 > th dose independent rect. 24 4
161 247.33 wind 7.0 90 > th dose dependent rect. 24 8
166 247.35 wind 7.0 90 > th dose independent rect. 24 8
189 247.53 precipitation 0.1 270 > th dose independent rect. 22 1
191 247.53 precipitation 0.1 270 > th dose dependent rect. 22 1
193 247.56 wind 3.0 10 > th dose dependent rect. 1 2
224 247.81 wind 9.0 720 < th dose independent rect. 24 18
227 247.82 wind 1.0 720 > th dose independent rect. 12 9
228 247.84 wind 9.0 720 < th dose independent rect. 21 15
234 247.97 humidity 50.0 10 > th dose independent rect. 1 11
236 248.03 wind 3.0 10 > th dose independent rect. 2 1
252 248.42 wind 9.0 720 < th dose independent rect. 15 21
271 248.57 humidity 80.0 720 > th dose independent rect. 3 4
272 248.57 wind 9.0 720 < th dose independent rect. 7 20
278 248.60 wind 1.0 720 > th dose dependent rect. 12 1
284 248.63 humidity 80.0 270 < th dose dependent rect. 6 1
287 248.66 atmosphere 1010.0 10 < th dose independent rect. 2 10
294 248.81 wind 9.0 720 < th dose independent rect. 13 23
298 248.84 wind 7.0 270 > th dose dependent rect. 20 5
307 249.04 wind 7.0 270 > th dose dependent rect. 19 20
316 249.19 humidity 80.0 270 < th dose independent rect. 6 1
317 249.21 temperature 30.0 10 > th dose independent rect. 18 17
348 249.42 humidity 50.0 720 > th dose independent rect. 21 15
352 249.48 atmosphere 1010.0 10 < th dose independent rect. 15 21
361 249.63 wind 1.0 270 > th dose independent rect. 11 13
372 249.83 atmosphere 1005.0 10 > th dose independent rect. 12 4
391 250.08 temperature 30.0 10 > th dose dependent rect. 10 1
409 250.09 wind 7.0 270 > th dose independent rect. 19 20
414 250.13 humidity 50.0 720 > th dose independent rect. 12 3
415 250.15 wind 1.0 10 > th dose independent rect. 12 13
419 250.19 temperature 10.0 720 > th dose independent rect. 12 9
420 250.19 temperature 10.0 720 > th dose independent rect. 21 15
421 250.19 atmosphere 995.0 720 > th dose independent rect. 21 15
424 250.24 humidity 50.0 90 > th dose independent rect. 12 13
425 250.25 wind 3.0 720 > th dose independent rect. 12 1
427 250.26 wind 1.0 720 > th dose independent rect. 9 15
428 250.28 wind 9.0 720 < th dose independent rect. 15 12
429 250.31 temperature 10.0 720 > th dose independent rect. 24 9
430 250.31 humidity 50.0 720 > th dose independent rect. 24 9
431 250.31 atmosphere 995.0 720 > th dose independent rect. 24 9
432 250.31 temperature 10.0 720 > th dose independent rect. 9 15
434 250.33 wind 9.0 720 < th dose independent rect. 24 9
437 250.35 humidity 50.0 10 > th dose independent rect. 12 14
439 250.36 wind 9.0 90 < th dose independent rect. 1 11
449 250.44 wind 9.0 720 < th dose independent rect. 15 4
450 250.46 temperature 30.0 720 < th dose independent rect. 3 12
451 250.46 wind 1.0 270 > th dose dependent rect. 20 3
453 250.48 wind 1.0 720 > th dose independent rect. 12 3
454 250.48 precipitation 0.1 90 < th dose independent rect. 1 11
458 250.48 precipitation 0.1 90 < th dose dependent rect. 1 11
461 250.52 precipitation 0.1 90 < th dose independent rect. 12 13
462 250.52 precipitation 0.1 90 < th dose dependent rect. 12 13
463 250.53 temperature 10.0 90 > th dose independent rect. 1 11
464 250.53 atmosphere 995.0 90 > th dose independent rect. 1 11
466 250.53 temperature 20.0 270 < th dose independent rect. 6 12
467 250.53 temperature 10.0 90 > th dose independent rect. 12 13
468 250.53 temperature 30.0 30 < th dose independent rect. 12 13
473 250.54 atmosphere 995.0 90 > th dose independent rect. 12 13
499 250.59 precipitation 0.1 10 < th dose independent rect. 1 11
500 250.59 precipitation 0.1 10 < th dose independent rect. 12 14
502 250.59 precipitation 0.1 10 < th dose dependent rect. 1 11
503 250.59 precipitation 0.1 10 < th dose dependent rect. 12 14
506 250.60 humidity 50.0 720 > th dose independent rect. 3 21
516 250.65 temperature 10.0 10 > th dose independent rect. 2 10
518 250.65 atmosphere 995.0 10 > th dose independent rect. 2 10
520 250.65 temperature 10.0 10 > th dose independent rect. 12 14
521 250.66 atmosphere 995.0 720 > th dose independent rect. 12 9
525 250.68 precipitation 0.1 720 < th dose independent rect. 9 15
526 250.68 precipitation 0.1 720 < th dose dependent rect. 9 15
529 250.69 humidity 50.0 720 > th dose independent rect. 12 11
537 250.76 temperature 30.0 720 < th dose independent rect. 12 1
543 250.78 humidity 50.0 720 > th dose independent rect. 12 19
545 250.79 wind 9.0 10 < th dose independent rect. 2 10
546 250.79 atmosphere 995.0 720 > th dose independent rect. 9 15
551 250.81 atmosphere 995.0 10 > th dose independent rect. 12 13
552 250.82 wind 9.0 4320 > th dose independent rect. 14 2
573 250.82 wind 1.0 30 > th dose independent rect. 1 11
606 250.89 wind 9.0 270 < th dose independent rect. 7 12
609 250.90 wind 9.0 720 < th dose independent rect. 14 14
619 250.94 temperature 30.0 720 < th dose independent rect. 12 3
630 250.97 radiation 1.0 4320 < th dose dependent rect. 1 4
664 251.08 precipitation 0.1 720 < th dose independent rect. 12 9
667 251.08 precipitation 0.1 720 < th dose dependent rect. 12 9
669 251.09 humidity 50.0 720 > th dose independent rect. 12 1
670 251.09 atmosphere 1010.0 720 < th dose independent rect. 24 1
676 251.11 humidity 80.0 720 > th dose independent rect. 24 3
727 251.19 atmosphere 1015.0 30 < th dose dependent rect. 1 11
729 251.20 humidity 80.0 10 > th dose independent rect. 14 1
752 251.25 wind 9.0 720 < th dose independent rect. 6 6
757 251.26 temperature 10.0 1440 > th dose independent rect. 3 10
760 251.26 atmosphere 995.0 1440 > th dose independent rect. 3 10
761 251.26 temperature 10.0 1440 > th dose independent rect. 13 14
773 251.29 wind 7.0 270 > th dose dependent sin 9 NA
779 251.32 atmosphere 1015.0 720 < th dose independent rect. 12 9
782 251.34 humidity 80.0 1440 > th dose independent rect. 4 1
797 251.40 wind 9.0 4320 < th dose independent rect. 14 2
804 251.41 atmosphere 995.0 10 > th dose dependent rect. 12 14
822 251.51 temperature 15.0 720 > th dose independent rect. 15 4
824 251.51 wind 1.0 90 > th dose dependent rect. 22 18
838 251.53 radiation 1.0 4320 < th dose dependent rect. 20 9
840 251.54 radiation 30.0 30 < th dose independent rect. 2 10
842 251.54 wind 9.0 720 < th dose independent rect. 23 13
854 251.57 atmosphere 1015.0 30 < th dose dependent rect. 15 21
856 251.58 wind 9.0 10 < th dose independent rect. 12 14
864 251.61 humidity 70.0 720 > th dose independent rect. 19 5
866 251.61 wind 9.0 4320 > th dose dependent rect. 14 2
868 251.61 temperature 10.0 30 > th dose dependent rect. 2 10
880 251.63 temperature 10.0 90 > th dose dependent rect. 15 21
881 251.64 precipitation 0.1 720 < th dose independent rect. 18 6
882 251.64 precipitation 0.1 720 < th dose dependent rect. 18 6
894 251.65 wind 7.0 90 < th dose independent rect. 15 14
903 251.68 temperature 30.0 270 < th dose independent rect. 24 11
913 251.70 humidity 80.0 720 > th dose independent rect. 24 1
914 251.70 temperature 30.0 720 < th dose independent rect. 24 9
919 251.73 temperature 10.0 720 > th dose independent rect. 12 3
920 251.73 atmosphere 1015.0 720 < th dose independent rect. 12 3
921 251.73 temperature 10.0 720 > th dose independent rect. 15 21
924 251.74 precipitation 0.1 720 < th dose independent rect. 24 9
925 251.74 precipitation 0.1 720 < th dose dependent rect. 24 9
927 251.75 wind 5.0 90 > th dose independent rect. 12 3
934 251.78 atmosphere 995.0 720 > th dose independent rect. 12 3
936 251.78 temperature 30.0 720 < th dose independent rect. 17 7
944 251.80 atmosphere 1000.0 270 > th dose independent rect. 7 12
945 251.81 humidity 50.0 720 > th dose independent rect. 17 7
955 251.85 atmosphere 1000.0 720 > th dose independent rect. 7 5
963 251.87 precipitation 0.1 720 < th dose independent rect. 3 21
969 251.87 precipitation 0.1 720 < th dose dependent rect. 3 21
973 251.89 humidity 50.0 720 > th dose independent rect. 6 6
992 251.92 temperature 10.0 720 > th dose independent rect. 24 3
993 251.92 temperature 30.0 720 < th dose independent rect. 24 3
994 251.92 humidity 50.0 720 > th dose independent rect. 24 3
997 251.92 atmosphere 995.0 720 > th dose independent rect. 24 3
998 251.92 radiation 1.0 720 < th dose independent rect. 24 3