Os06g0322400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os06g0322400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 763.4 | 1.3 | 4.93 | 5.39 | 1.68 | 4.71 | 3.22 | 5.85 | 2.36 | 15.5 | 2.248 | 1446 | 6.74 | -- |
| 801.57 | 1.32 | 4.85 | 6.24 | 1.74 | 4.44 | 2.94 | -- | 2.55 | 15.6 | 2.747 | 1445 | 6.69 | -- |
| 790.37 | 1.31 | 4.93 | 5.42 | 1.52 | 4.76 | -- | 6.23 | 2.39 | 16.6 | 2.242 | 1432 | 6.69 | -- |
| 827.6 | 1.34 | 4.83 | 6.48 | 1.75 | 4.55 | -- | -- | 2.62 | 15.4 | 2.733 | 1446 | 6.7 | -- |
| 903.4 | 1.4 | 4.93 | 5.34 | -- | 5.34 | -- | 7.1 | 2.32 | -- | 2.232 | 1425 | 6.14 | -- |
| 1222.17 | 1.64 | 5.02 | 5.86 | 1.73 | -- | 3.87 | -- | 1.85 | 15.9 | -- | -- | -- | -- |
| 1265.85 | 1.67 | 5.01 | 5.91 | 1.76 | -- | -- | -- | 1.88 | 16 | -- | -- | -- | -- |
| 952.36 | 1.44 | 4.83 | 6.44 | -- | 5.05 | -- | -- | 2.56 | -- | 2.742 | 1426 | 6.3 | -- |
| 1745.05 | 1.95 | 4.95 | -- | 1.47 | 4.85 | -- | -- | 1.99 | 15.3 | 10 | 1450 | 7.29 | -- |
| 1434.47 | 1.77 | 5 | 5.84 | -- | -- | -- | -- | 1.83 | -- | -- | -- | -- | -- |
| 2187.92 | 2.19 | 5.16 | -- | 1.64 | -- | -- | -- | 1.22 | 16.1 | -- | -- | -- | -- |
| 1846.1 | 2 | 4.99 | -- | -- | 4.82 | -- | -- | 1.86 | -- | 10 | 1429 | 7.65 | -- |
| 2335.04 | 2.26 | 5.15 | -- | -- | -- | -- | -- | 1.18 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 720.38 | temperature | 25.0 | 14400 | > th | dose dependent | sin | 4 | NA |
| 4 | 720.83 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 24 | 17 |
| 6 | 720.88 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 6 | 11 |
| 7 | 720.91 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 3 | 14 |
| 28 | 721.11 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 21 | 20 |
| 32 | 721.22 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 38 | 721.37 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 6 | 8 |
| 91 | 722.11 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 13 | 21 |
| 125 | 722.46 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 6 | 20 |
| 162 | 722.72 | temperature | 25.0 | 14400 | > th | dose dependent | no | NA | NA |
| 219 | 724.11 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 248 | 724.83 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 265 | 725.47 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 13 | 9 |
| 274 | 725.60 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 15 | 2 |
| 279 | 725.62 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 12 | 14 |
| 367 | 728.31 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 13 | 3 |
| 392 | 729.61 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 15 | 17 |
| 393 | 729.63 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 14 | 18 |
| 397 | 729.94 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 433 | 731.36 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 471 | 732.92 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 15 | 13 |
| 493 | 733.67 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 15 | 13 |
| 495 | 733.78 | temperature | 25.0 | 14400 | > th | dose independent | sin | 14 | NA |
| 525 | 734.30 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 530 | 734.51 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 15 | 11 |
| 535 | 734.71 | temperature | 25.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 602 | 736.09 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 2 | 14 |
| 603 | 736.10 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 24 | 16 |
| 604 | 736.10 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 21 | 19 |
| 606 | 736.11 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 6 | 10 |
| 607 | 736.11 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 4 | 12 |
| 624 | 736.19 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 632 | 736.36 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 17 | 5 |
| 645 | 736.53 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 687 | 737.06 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 760 | 738.00 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 825 | 738.64 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 829 | 738.70 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 831 | 738.70 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 2 |