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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0320200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycoside hydrolase, family 1 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.12 (0.0427) R2 : 0.585
β1 : -2.48 (0.158) R2dD : 0.237 R2D : 0.255
β2 : 2.12 (0.116) R2dC : 0.363 R2C : 0.245
β3 : 1.2 (0.146) R2dE : 0.0755 R2E : -0.0333
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.413 (0.0914) R2dN8 : 0.0251 R2N8 : -0.011
σ : 0.798
deviance : 293.43
__
_____
C
peak time of C : 15.1
E
wheather : temperature
threshold : 29.78
memory length : 51
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
281.66 0.789 4.11 -2.35 2.08 1.25 -1.96 -1.28 -0.402 15.1 29.9 52 -- --
281.97 0.782 4.12 -2.45 2.1 1.1 -1.89 -- -0.397 15.1 29.75 51 -- --
293.43 0.798 4.13 -2.49 2.11 1.18 -- 0.126 -0.411 15.1 29.7 51 -- --
293.43 0.798 4.12 -2.48 2.12 1.2 -- -- -0.413 15.1 29.78 51 -- --
508.56 1.06 4.12 -2.84 -- -0.161 -- 0.974 -0.413 -- 29.7 51 -- --
317.91 0.836 4.1 -2.61 1.75 -- -2.4 -- -0.334 15.1 -- -- -- --
336.98 0.86 4.11 -2.66 1.74 -- -- -- -0.348 15 -- -- -- --
481.73 1.02 4.13 -2.82 -- -0.582 -- -- -0.481 -- 26.63 154 -- --
451.4 0.99 4.07 -- 2.22 1.48 -- -- -0.146 15.1 29.8 63 -- --
509.6 1.05 4.11 -2.73 -- -- -- -- -0.393 -- -- -- -- --
523.32 1.07 4.04 -- 1.79 -- -- -- -0.0517 15 -- -- -- --
687.55 1.23 4.07 -- -- -0.426 -- -- -0.204 -- 25.9 147 -- --
706.61 1.24 4.04 -- -- -- -- -- -0.0897 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 280.86 temperature 30.0 14400 < th dose independent rect. 13 1
2 281.30 temperature 30.0 14400 > th dose independent rect. 13 1
3 281.35 temperature 30.0 90 < th dose independent rect. 21 23
5 281.48 precipitation 0.1 14400 < th dose independent rect. 21 17
6 281.48 precipitation 0.1 14400 < th dose dependent rect. 21 17
7 281.49 precipitation 0.1 14400 < th dose independent rect. 21 10
8 281.49 precipitation 0.1 14400 < th dose dependent rect. 21 10
9 281.51 precipitation 0.1 14400 > th dose independent rect. 21 10
10 281.60 precipitation 0.1 14400 > th dose independent rect. 21 17
11 281.64 radiation 40.0 1440 < th dose dependent rect. 24 6
18 281.73 precipitation 0.1 14400 < th dose independent rect. 21 13
19 281.73 precipitation 0.1 14400 < th dose dependent rect. 21 13
20 281.75 precipitation 0.1 14400 > th dose independent rect. 21 13
22 281.76 humidity 80.0 43200 > th dose independent rect. 11 2
25 281.78 radiation 1.0 14400 < th dose independent rect. 18 2
27 281.80 radiation 1.0 14400 < th dose independent rect. 18 7
28 281.80 radiation 1.0 14400 < th dose independent rect. 18 10
46 281.92 radiation 40.0 1440 < th dose dependent rect. 2 4
49 282.01 humidity 80.0 43200 > th dose dependent rect. 10 3
54 282.06 humidity 90.0 43200 > th dose independent rect. 8 3
99 282.48 radiation 1.0 4320 < th dose independent rect. 2 5
100 282.49 radiation 1.0 4320 < th dose independent rect. 24 7
105 282.52 humidity 90.0 14400 > th dose independent rect. 21 9
108 282.57 radiation 1.0 4320 > th dose independent rect. 4 3
119 282.58 radiation 1.0 4320 < th dose independent rect. 20 11
130 282.65 humidity 90.0 14400 > th dose dependent rect. 22 5
132 282.68 temperature 30.0 30 < th dose independent rect. 9 23
137 282.73 radiation 1.0 14400 > th dose independent rect. 18 1
180 282.92 humidity 80.0 43200 < th dose independent rect. 11 2
202 283.00 temperature 30.0 14400 < th dose independent rect. 11 17
294 283.22 radiation 1.0 43200 < th dose dependent rect. 4 1
304 283.28 humidity 90.0 14400 > th dose dependent rect. 22 13
317 283.30 humidity 90.0 14400 > th dose dependent rect. 21 9
319 283.32 humidity 90.0 14400 > th dose dependent rect. 22 16
331 283.39 temperature 25.0 720 > th dose dependent rect. 6 6
338 283.40 temperature 30.0 90 < th dose independent rect. 13 14
362 283.43 humidity 90.0 14400 > th dose independent rect. 24 15
365 283.44 humidity 90.0 43200 < th dose independent rect. 8 3
367 283.46 temperature 30.0 14400 < th dose independent rect. 3 13
373 283.46 temperature 30.0 90 > th dose independent rect. 15 22
397 283.48 temperature 30.0 14400 < th dose independent sin 20 NA
405 283.50 precipitation 0.1 14400 > th dose dependent rect. 21 10
406 283.50 precipitation 0.1 14400 > th dose dependent rect. 21 17
413 283.53 humidity 90.0 14400 > th dose independent rect. 22 5
421 283.53 humidity 90.0 14400 > th dose independent rect. 24 11
432 283.53 precipitation 0.1 43200 > th dose dependent rect. 2 1
459 283.58 precipitation 0.1 14400 > th dose independent sin 7 NA
460 283.58 precipitation 0.1 14400 < th dose independent sin 7 NA
462 283.58 precipitation 0.1 14400 < th dose dependent sin 7 NA
467 283.59 temperature 30.0 30 < th dose independent no NA NA
469 283.59 precipitation 0.1 14400 > th dose dependent rect. 21 13
475 283.61 precipitation 0.1 14400 > th dose dependent rect. 21 6
476 283.62 temperature 30.0 14400 > th dose independent sin 19 NA
502 283.66 temperature 25.0 720 > th dose dependent rect. 7 3
577 283.75 temperature 25.0 14400 > th dose independent rect. 2 7
605 283.79 radiation 1.0 43200 < th dose dependent rect. 21 8
611 283.81 temperature 30.0 14400 < th dose independent no NA NA
623 283.81 humidity 90.0 14400 < th dose independent rect. 24 15
645 283.81 temperature 30.0 14400 < th dose independent rect. 7 21
727 283.83 temperature 25.0 43200 < th dose dependent rect. 10 1
745 283.84 radiation 1.0 4320 < th dose dependent rect. 5 1
757 283.88 temperature 25.0 14400 < th dose independent rect. 2 7
786 283.93 radiation 20.0 1440 < th dose dependent rect. 19 11
796 283.97 temperature 30.0 14400 > th dose independent no NA NA
914 283.99 temperature 30.0 14400 < th dose independent rect. 15 23
915 283.99 humidity 90.0 14400 > th dose dependent sin 7 NA
916 283.99 precipitation 0.1 43200 > th dose dependent rect. 1 4
934 284.04 temperature 25.0 14400 > th dose dependent rect. 12 1
935 284.04 humidity 90.0 14400 > th dose dependent rect. 24 1
980 284.16 temperature 30.0 14400 > th dose independent rect. 15 23
994 284.18 humidity 90.0 14400 < th dose independent rect. 24 9