Os06g0320000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF953, thioredoxin-like family protein.
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Os06g0320000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF953, thioredoxin-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.96 | 0.335 | 11.8 | 0.553 | 2.28 | 0.614 | -0.785 | 1.5 | -0.0751 | 15.9 | 21.7 | 973 | -- | -- |
| 57.93 | 0.354 | 11.9 | 0.355 | 2.24 | 0.521 | -1.18 | -- | -0.116 | 15.9 | 23.1 | 894 | -- | -- |
| 52.58 | 0.338 | 11.8 | 0.597 | 2.28 | 0.599 | -- | 1.61 | -0.0689 | 15.9 | 21.84 | 981 | -- | -- |
| 57.63 | 0.354 | 11.9 | 0.122 | 2.25 | 0.511 | -- | -- | -0.225 | 15.8 | 23.1 | 801 | -- | -- |
| 197.69 | 0.655 | 11.9 | 0.539 | -- | 1.65 | -- | 0.319 | -0.0286 | -- | 27.67 | 249 | -- | -- |
| 68.18 | 0.387 | 11.8 | 0.336 | 2.25 | -- | -0.896 | -- | -0.00568 | 16 | -- | -- | -- | -- |
| 70.49 | 0.393 | 11.8 | 0.325 | 2.24 | -- | -- | -- | -0.0107 | 16 | -- | -- | -- | -- |
| 177.2 | 0.62 | 11.9 | -0.125 | -- | 1.6 | -- | -- | -0.324 | -- | 27.44 | 250 | -- | -- |
| 58.04 | 0.355 | 11.9 | -- | 2.26 | 0.538 | -- | -- | -0.248 | 15.8 | 23.17 | 809 | -- | -- |
| 344.81 | 0.868 | 11.8 | 0.233 | -- | -- | -- | -- | -0.0705 | -- | -- | -- | -- | -- |
| 73.26 | 0.4 | 11.8 | -- | 2.24 | -- | -- | -- | -0.0468 | 16 | -- | -- | -- | -- |
| 177.61 | 0.621 | 11.9 | -- | -- | 1.59 | -- | -- | -0.309 | -- | 27.41 | 250 | -- | -- |
| 346.24 | 0.869 | 11.8 | -- | -- | -- | -- | -- | -0.0963 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 12 |
| 2 | 48.79 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 5 | 49.10 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 19 |
| 6 | 49.17 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 68 | 51.00 | temperature | 20 | 270 | > th | dose dependent | sin | 4 | NA |
| 80 | 51.08 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 6 |
| 125 | 51.41 | temperature | 10 | 270 | > th | dose dependent | sin | 4 | NA |
| 163 | 51.67 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 19 |
| 211 | 52.02 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 212 | 52.03 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 11 |
| 234 | 52.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 239 | 52.22 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 253 | 52.26 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 260 | 52.28 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 280 | 52.38 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 292 | 52.41 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 304 | 52.49 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 386 | 52.86 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 401 | 52.93 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 425 | 53.00 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 441 | 53.06 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 464 | 53.17 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 13 |
| 551 | 53.47 | temperature | 25 | 270 | < th | dose independent | sin | 3 | NA |
| 607 | 53.73 | temperature | 15 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 661 | 53.96 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 19 |
| 679 | 54.00 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 744 | 54.21 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 11 |
| 806 | 54.40 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 818 | 54.46 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 6 |
| 876 | 54.66 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 18 |
| 879 | 54.67 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 11 |
| 953 | 54.85 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 13 |