Os06g0319800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0319800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.4 | 0.4 | 13.9 | 1.07 | 2.23 | 1.09 | -1.67 | 0.409 | 0.169 | 20.5 | 20.86 | 73 | -- | -- |
| 72.5 | 0.397 | 13.9 | 0.997 | 2.23 | 1.12 | -1.7 | -- | 0.148 | 20.5 | 21.1 | 66 | -- | -- |
| 80.95 | 0.422 | 13.9 | 1.27 | 2.3 | 1.05 | -- | 1.25 | 0.211 | 20.5 | 20.86 | 73 | -- | -- |
| 81.81 | 0.421 | 13.9 | 1.03 | 2.25 | 1.13 | -- | -- | 0.139 | 20.5 | 20.9 | 63 | -- | -- |
| 256.13 | 0.745 | 13.9 | 0.188 | -- | 2.42 | -- | -3.58 | -0.179 | -- | 23.43 | 587 | -- | -- |
| 94.07 | 0.455 | 13.8 | 1.25 | 2.33 | -- | -1.69 | -- | 0.34 | 19.9 | -- | -- | -- | -- |
| 102.32 | 0.474 | 13.8 | 1.29 | 2.34 | -- | -- | -- | 0.338 | 19.8 | -- | -- | -- | -- |
| 263.38 | 0.756 | 13.9 | 0.719 | -- | 2.28 | -- | -- | -0.0862 | -- | 20.6 | 567 | -- | -- |
| 108.8 | 0.486 | 13.9 | -- | 2.21 | 1.73 | -- | -- | -0.024 | 20.7 | 15.92 | 90 | -- | -- |
| 398.08 | 0.932 | 13.8 | 1.27 | -- | -- | -- | -- | 0.306 | -- | -- | -- | -- | -- |
| 146.48 | 0.566 | 13.9 | -- | 2.33 | -- | -- | -- | 0.194 | 19.9 | -- | -- | -- | -- |
| 274.77 | 0.772 | 13.9 | -- | -- | 2.62 | -- | -- | -0.211 | -- | 18.54 | 575 | -- | -- |
| 440.45 | 0.98 | 13.8 | -- | -- | -- | -- | -- | 0.166 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.37 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 11 |
| 4 | 61.83 | temperature | 20 | 270 | > th | dose dependent | sin | 6 | NA |
| 5 | 61.99 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 6 | 62.01 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 11 |
| 20 | 63.27 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 10 |
| 22 | 63.49 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 13 |
| 24 | 63.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 26 | 63.94 | temperature | 30 | 270 | < th | dose dependent | sin | 6 | NA |
| 29 | 64.04 | temperature | 25 | 270 | < th | dose independent | sin | 6 | NA |
| 43 | 64.45 | temperature | 30 | 90 | < th | dose dependent | sin | 4 | NA |
| 47 | 64.65 | temperature | 25 | 270 | > th | dose independent | sin | 6 | NA |
| 56 | 64.96 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 91 | 65.92 | temperature | 25 | 90 | > th | dose independent | sin | 3 | NA |
| 99 | 66.16 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 16 |
| 131 | 66.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 133 | 66.68 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 12 |
| 147 | 66.91 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 14 |
| 154 | 67.14 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 175 | 67.40 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 11 |
| 179 | 67.50 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 18 |
| 195 | 67.67 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 202 | 67.72 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 22 |
| 238 | 68.23 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 16 |
| 254 | 68.34 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 20 |
| 325 | 68.91 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 18 |
| 332 | 68.97 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 20 |
| 452 | 69.83 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 4 |
| 487 | 70.06 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 4 |
| 834 | 71.87 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 888 | 72.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 948 | 72.35 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 22 |
| 997 | 72.55 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 20 |