Os06g0318800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os06g0318800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 302.21 | 0.817 | 8.02 | -0.0816 | 1.38 | -1.29 | -2.26 | -1.66 | -0.126 | 11.5 | 20.71 | 861 | -- | -- |
| 308.82 | 0.818 | 7.98 | 0.245 | 1.4 | -1.12 | -1.81 | -- | -0.0576 | 11.4 | 20.8 | 880 | -- | -- |
| 321.49 | 0.835 | 8 | 0.00165 | 1.41 | -1.23 | -- | -0.745 | -0.0817 | 11.4 | 20.88 | 880 | -- | -- |
| 322.5 | 0.836 | 7.97 | 0.187 | 1.4 | -1.16 | -- | -- | -0.0475 | 11.3 | 20.85 | 888 | -- | -- |
| 438.14 | 0.975 | 7.99 | 0.155 | -- | -1.58 | -- | -0.632 | 0.042 | -- | 21.11 | 874 | -- | -- |
| 346.61 | 0.873 | 8.03 | -0.186 | 1.57 | -- | -1.89 | -- | -0.321 | 11.4 | -- | -- | -- | -- |
| 361.8 | 0.891 | 8.03 | -0.264 | 1.58 | -- | -- | -- | -0.329 | 11.3 | -- | -- | -- | -- |
| 439.29 | 0.976 | 7.98 | 0.293 | -- | -1.54 | -- | -- | 0.0626 | -- | 21.18 | 877 | -- | -- |
| 323.26 | 0.837 | 7.98 | -- | 1.41 | -1.09 | -- | -- | -0.0755 | 11.4 | 20.98 | 878 | -- | -- |
| 517.97 | 1.06 | 8.07 | -0.304 | -- | -- | -- | -- | -0.344 | -- | -- | -- | -- | -- |
| 363.64 | 0.892 | 8.03 | -- | 1.58 | -- | -- | -- | -0.3 | 11.3 | -- | -- | -- | -- |
| 441.06 | 0.978 | 7.99 | -- | -- | -1.43 | -- | -- | 0.0236 | -- | 21.4 | 871 | -- | -- |
| 520.4 | 1.06 | 8.06 | -- | -- | -- | -- | -- | -0.311 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 296.27 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 10 |
| 2 | 296.48 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 7 |
| 6 | 297.58 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 6 |
| 19 | 299.00 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 1 |
| 28 | 299.62 | humidity | 90 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 47 | 300.59 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 18 |
| 57 | 300.93 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 7 |
| 67 | 301.34 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 9 |
| 82 | 301.79 | humidity | 80 | 270 | < th | dose dependent | rect. | 11 | 7 |
| 91 | 302.11 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 8 |
| 110 | 302.63 | temperature | 25 | 270 | < th | dose dependent | rect. | 24 | 19 |
| 112 | 302.66 | humidity | 90 | 270 | < th | dose dependent | sin | 20 | NA |
| 113 | 302.67 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 13 |
| 126 | 302.92 | humidity | 90 | 270 | < th | dose dependent | rect. | 24 | 18 |
| 140 | 303.12 | temperature | 20 | 720 | < th | dose independent | sin | 10 | NA |
| 147 | 303.26 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 204 | 304.19 | humidity | 90 | 90 | < th | dose dependent | sin | 17 | NA |
| 221 | 304.37 | humidity | 90 | 270 | < th | dose dependent | rect. | 13 | 18 |
| 247 | 304.65 | temperature | 20 | 720 | > th | dose independent | sin | 9 | NA |
| 277 | 305.11 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 11 |
| 320 | 305.64 | humidity | 90 | 270 | < th | dose dependent | rect. | 13 | 5 |
| 343 | 305.82 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 15 |
| 360 | 305.97 | humidity | 90 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 361 | 305.99 | temperature | 20 | 270 | > th | dose dependent | sin | 7 | NA |
| 381 | 306.12 | humidity | 50 | 90 | > th | dose dependent | sin | 16 | NA |
| 406 | 306.27 | humidity | 90 | 10 | < th | dose dependent | sin | 16 | NA |
| 423 | 306.42 | temperature | 25 | 10 | > th | dose independent | rect. | 8 | 8 |
| 482 | 306.92 | humidity | 80 | 270 | < th | dose independent | rect. | 13 | 5 |
| 503 | 307.07 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 20 |
| 509 | 307.10 | humidity | 90 | 270 | < th | dose dependent | rect. | 14 | 3 |
| 530 | 307.27 | temperature | 20 | 90 | > th | dose dependent | sin | 5 | NA |
| 536 | 307.31 | humidity | 80 | 270 | < th | dose dependent | rect. | 13 | 22 |
| 589 | 307.73 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 18 |
| 663 | 308.23 | temperature | 10 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 678 | 308.34 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 9 |
| 715 | 308.55 | humidity | 80 | 270 | < th | dose dependent | no | NA | NA |
| 737 | 308.62 | humidity | 80 | 270 | < th | dose dependent | rect. | 5 | 23 |
| 795 | 308.91 | humidity | 80 | 90 | < th | dose independent | rect. | 15 | 3 |
| 802 | 308.93 | humidity | 80 | 10 | < th | dose dependent | rect. | 17 | 2 |
| 808 | 308.95 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 841 | 309.10 | humidity | 90 | 10 | < th | dose dependent | rect. | 15 | 17 |
| 847 | 309.13 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 1 |
| 853 | 309.16 | humidity | 50 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 877 | 309.23 | humidity | 80 | 270 | < th | dose independent | rect. | 11 | 7 |
| 906 | 309.32 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 908 | 309.32 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 920 | 309.37 | temperature | 20 | 720 | < th | dose independent | rect. | 2 | 20 |
| 931 | 309.43 | humidity | 70 | 270 | < th | dose independent | rect. | 11 | 21 |
| 937 | 309.46 | humidity | 90 | 90 | < th | dose dependent | rect. | 16 | 2 |
| 940 | 309.47 | radiation | 40 | 270 | > th | dose dependent | rect. | 14 | 19 |
| 954 | 309.56 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 963 | 309.61 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 981 | 309.68 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 23 |