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Os06g0317200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Homeobox protein Hox-D11 (Hox-4.6) (Hox-5.5).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.97 (0.0551) R2 : 0.622
β1 : 4.33 (0.2) R2dD : 0.396 R2D : 0.154
β2 : 1.65 (0.13) R2dC : 0.119 R2C : 0.047
β3 : -1.82 (0.117) R2dE : 0.252 R2E : -0.0871
β4 : 2.66 (0.518) R2dD*C : 0.021 R2D*C : -0.0646
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.83 (0.127) R2dN8 : 0.286 R2N8 : -0.0881
σ : 1
deviance : 464.1
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_____
C
peak time of C : 2.05
E
wheather : temperature
threshold : 25.1
memory length : 1385
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 6.42
open length of G : 2.05

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
463.22 1.01 7.97 4.75 1.57 -1.91 2.49 1.4 1.86 2.15 25.08 1398 6.18 2.08
464.1 1 7.97 4.33 1.65 -1.82 2.66 -- 1.83 2.05 25.1 1385 6.42 2.05
480.55 1.02 7.97 4.8 1.64 -1.93 -- 1.62 1.89 2.67 25.1 1396 6.25 2.18
483.62 1.02 7.96 4.13 1.7 -1.74 -- -- 1.84 2.85 25.1 1398 6.42 1.9
629.06 1.17 7.96 4.81 -- -1.87 -- 1.77 1.92 -- 25.15 1371 6.28 2.18
701.46 1.24 8.19 3.62 1.53 -- 2.01 -- 0.928 2.49 -- -- -- --
712.72 1.25 8.19 3.56 1.57 -- -- -- 0.914 3.09 -- -- -- --
614.53 1.15 7.99 3.92 -- -1.82 -- -- 1.71 -- 25.09 912 6.67 1.93
913.01 1.41 8.02 -- 1.69 -1.36 -- -- 1.33 2.95 25 1422 6.66 0.85
853.96 1.37 8.18 3.63 -- -- -- -- 0.955 -- -- -- -- --
1047.56 1.51 8.28 -- 1.64 -- -- -- 0.517 3.09 -- -- -- --
1008.6 1.48 8.16 -- -- -1.59 -- -- 0.967 -- 25.21 710 6.87 1.85
1201.8 1.62 8.27 -- -- -- -- -- 0.552 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 448.09 wind 3 43200 > th dose independent rect. 9 1
2 451.94 wind 3 43200 < th dose independent rect. 9 1
5 462.46 wind 5 43200 < th dose dependent rect. 9 1
6 467.09 wind 3 43200 > th dose dependent rect. 20 1
7 467.27 radiation 1 14400 < th dose dependent rect. 4 1
8 468.09 radiation 1 14400 < th dose dependent rect. 2 3
13 470.17 wind 5 43200 < th dose independent rect. 5 12
14 470.26 wind 5 43200 > th dose independent rect. 5 12
15 470.93 wind 5 43200 < th dose independent rect. 19 2
20 471.67 wind 5 43200 > th dose independent rect. 5 17
21 471.90 wind 1 43200 > th dose dependent rect. 9 1
26 472.58 wind 5 43200 > th dose independent rect. 19 2
32 473.32 wind 5 43200 < th dose independent rect. 4 18
44 473.82 wind 5 43200 > th dose independent sin 1 NA
50 474.09 wind 5 43200 < th dose independent sin 1 NA
52 474.14 temperature 25 1440 > th dose dependent rect. 8 1
56 474.32 temperature 25 1440 > th dose independent rect. 6 2
71 474.95 wind 5 43200 > th dose dependent rect. 9 7
72 474.98 temperature 25 1440 < th dose independent rect. 6 2
73 475.12 wind 5 43200 > th dose independent rect. 8 8
86 475.44 wind 5 43200 > th dose dependent rect. 5 16
102 475.80 wind 5 14400 > th dose independent rect. 5 8
113 475.97 wind 5 43200 > th dose dependent rect. 9 13
117 476.12 wind 5 43200 > th dose dependent rect. 5 12
120 476.19 wind 5 43200 > th dose dependent sin 23 NA
154 477.05 wind 5 43200 < th dose independent rect. 19 23
183 477.50 wind 5 43200 > th dose independent rect. 9 22
188 477.55 wind 5 14400 < th dose independent rect. 5 8
195 477.73 wind 5 14400 > th dose independent rect. 7 6
208 478.01 wind 5 43200 < th dose independent rect. 14 23
211 478.05 wind 5 43200 < th dose independent rect. 9 23
237 478.58 wind 5 43200 > th dose independent rect. 19 23
246 478.67 wind 5 43200 > th dose independent rect. 14 23
255 478.93 wind 5 43200 < th dose independent no NA NA
261 479.10 wind 5 43200 > th dose independent no NA NA
291 479.54 wind 5 14400 < th dose independent rect. 7 6
315 480.01 wind 1 43200 < th dose dependent rect. 1 1
330 480.21 temperature 25 1440 > th dose dependent rect. 18 17
338 480.30 temperature 20 14400 < th dose independent rect. 24 1
392 481.21 wind 3 43200 > th dose dependent rect. 19 22
407 481.47 temperature 25 1440 > th dose dependent rect. 4 5
408 481.51 wind 5 43200 > th dose dependent rect. 10 21
421 481.72 temperature 20 14400 > th dose independent rect. 21 4
433 481.92 humidity 80 43200 > th dose independent rect. 2 1
451 482.20 temperature 20 14400 < th dose independent rect. 21 5
465 482.44 wind 1 43200 < th dose dependent rect. 24 4
563 483.83 wind 5 43200 < th dose dependent rect. 8 4
626 484.77 wind 5 14400 > th dose dependent rect. 5 7
648 485.12 humidity 80 43200 < th dose dependent rect. 2 6
667 485.43 humidity 80 43200 < th dose independent rect. 21 2
693 485.80 wind 9 43200 > th dose dependent rect. 19 2
724 486.17 wind 5 43200 > th dose dependent no NA NA
858 487.50 wind 5 14400 > th dose independent rect. 24 13
874 487.74 temperature 20 14400 > th dose independent sin 13 NA
895 487.89 wind 5 14400 < th dose independent rect. 24 13
912 488.02 temperature 20 14400 > th dose independent rect. 13 17
948 488.30 temperature 20 14400 < th dose independent sin 13 NA
953 488.33 wind 5 43200 > th dose dependent rect. 13 23
973 488.49 temperature 20 14400 < th dose independent rect. 13 17