Os06g0316800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glycine-rich protein (Fragment).
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Os06g0316800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Glycine-rich protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 434.45 | 0.979 | 4.03 | 3.08 | 0.364 | -2.19 | 1.76 | 1.39 | 0.94 | 0.184 | 25.55 | 9460 | 15.1 | -- |
| 437.06 | 0.974 | 4.1 | 2.74 | 0.358 | -2.21 | 1.76 | -- | 0.812 | 23.9 | 25.5 | 9444 | 15.2 | -- |
| 443.8 | 0.981 | 4.01 | 3.09 | 0.489 | -2.14 | -- | 2.01 | 0.936 | 2.88 | 25.5 | 9620 | 12.6 | -- |
| 445.69 | 0.983 | 4.11 | 2.45 | 0.431 | -2.07 | -- | -- | 0.703 | 3.5 | 25.52 | 10059 | 13.1 | -- |
| 453.7 | 0.992 | 4.01 | 3.16 | -- | -2.04 | -- | 1.85 | 0.938 | -- | 25.99 | 10097 | 14 | -- |
| 591.35 | 1.14 | 4.29 | 1.43 | 0.047 | -- | 1.82 | -- | -0.0963 | 22.5 | -- | -- | -- | -- |
| 599.3 | 1.15 | 4.29 | 1.35 | 0.326 | -- | -- | -- | -0.11 | 4.29 | -- | -- | -- | -- |
| 456.86 | 0.996 | 4.11 | 2.47 | -- | -2.02 | -- | -- | 0.721 | -- | 25.6 | 8973 | 15.3 | -- |
| 579.37 | 1.12 | 4.09 | -- | 0.388 | -1.47 | -- | -- | 0.398 | 3.73 | 26.8 | 9455 | 13.9 | -- |
| 605.03 | 1.15 | 4.29 | 1.36 | -- | -- | -- | -- | -0.101 | -- | -- | -- | -- | -- |
| 647.31 | 1.19 | 4.33 | -- | 0.352 | -- | -- | -- | -0.26 | 4.21 | -- | -- | -- | -- |
| 573.14 | 1.12 | 4.25 | -- | -- | -1.31 | -- | -- | 0.152 | -- | 28.4 | 7939 | 14.3 | -- |
| 654 | 1.19 | 4.33 | -- | -- | -- | -- | -- | -0.252 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 438.19 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 3 | 438.57 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 4 | 439.07 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 5 | 439.67 | temperature | 20 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 19 | 441.85 | temperature | 20 | 14400 | < th | dose independent | rect. | 13 | 17 |
| 22 | 442.02 | temperature | 20 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 26 | 442.11 | temperature | 20 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 30 | 442.30 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 33 | 442.31 | temperature | 20 | 14400 | > th | dose independent | rect. | 13 | 17 |
| 47 | 442.63 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 52 | 442.71 | temperature | 20 | 14400 | < th | dose independent | sin | 13 | NA |
| 59 | 442.90 | temperature | 20 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 79 | 443.17 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 83 | 443.20 | temperature | 20 | 14400 | > th | dose independent | sin | 13 | NA |
| 113 | 443.48 | temperature | 20 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 119 | 443.59 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 121 | 443.60 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 152 | 443.95 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 280 | 445.50 | temperature | 20 | 14400 | < th | dose independent | rect. | 19 | 21 |
| 316 | 445.76 | temperature | 20 | 14400 | > th | dose independent | rect. | 18 | 21 |
| 334 | 445.93 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 19 |
| 467 | 447.07 | temperature | 20 | 14400 | < th | dose independent | no | NA | NA |
| 474 | 447.14 | temperature | 25 | 14400 | > th | dose independent | rect. | 11 | 12 |
| 480 | 447.16 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 4 |
| 487 | 447.21 | temperature | 20 | 14400 | > th | dose independent | rect. | 3 | 23 |
| 489 | 447.22 | temperature | 20 | 14400 | < th | dose independent | rect. | 3 | 23 |
| 499 | 447.35 | temperature | 20 | 14400 | > th | dose independent | no | NA | NA |
| 517 | 447.54 | temperature | 25 | 14400 | < th | dose independent | rect. | 11 | 12 |
| 560 | 447.80 | temperature | 25 | 14400 | > th | dose independent | sin | 18 | NA |
| 582 | 447.97 | temperature | 25 | 14400 | < th | dose independent | sin | 18 | NA |
| 593 | 448.03 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 4 |
| 646 | 448.44 | temperature | 20 | 14400 | > th | dose dependent | rect. | 17 | 6 |
| 653 | 448.53 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 16 |
| 682 | 448.68 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 16 |
| 694 | 448.76 | humidity | 80 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 739 | 449.11 | temperature | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 746 | 449.16 | humidity | 80 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 759 | 449.25 | wind | 5 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 800 | 449.48 | temperature | 25 | 14400 | > th | dose independent | rect. | 4 | 17 |
| 924 | 450.12 | temperature | 20 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 964 | 450.35 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 1 |