Os06g0316300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycine rich family protein.
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Os06g0316300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycine rich family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 261.93 | 0.76 | 12.6 | -2.01 | 1.39 | 4.22 | 2.25 | -0.343 | -1.09 | 6.15 | 4.435 | 268 | 2.4 | 15.3 |
| 261.33 | 0.753 | 12.6 | -1.97 | 1.38 | 4.32 | 2.43 | -- | -1.09 | 5.84 | 4.554 | 268 | 2.42 | 15.1 |
| 273.9 | 0.771 | 12.6 | -1.96 | 1.41 | 4.21 | -- | -0.449 | -1.1 | 6.18 | 4.906 | 270 | 2.37 | 15.2 |
| 274.11 | 0.771 | 12.6 | -1.95 | 1.31 | 4.16 | -- | -- | -1.09 | 6.06 | 3.581 | 266 | 2.42 | 15.1 |
| 298.92 | 0.805 | 12.7 | -1.73 | -- | 4.1 | -- | 0.189 | -0.978 | -- | 1.459 | 217 | 1.77 | 15.5 |
| 422.31 | 0.963 | 12.5 | -1.49 | 3.17 | -- | 0.361 | -- | -0.737 | 11.3 | -- | -- | -- | -- |
| 422.87 | 0.963 | 12.5 | -1.47 | 3.16 | -- | -- | -- | -0.736 | 11.3 | -- | -- | -- | -- |
| 292.37 | 0.796 | 12.6 | -1.83 | -- | 4.16 | -- | -- | -0.953 | -- | 0.507 | 217 | 1.52 | 15.9 |
| 367.69 | 0.893 | 12.6 | -- | 1.2 | 3.71 | -- | -- | -0.882 | 6.56 | -1.231 | 259 | 2.57 | 15.1 |
| 1050.1 | 1.51 | 12.6 | -1.55 | -- | -- | -- | -- | -0.766 | -- | -- | -- | -- | -- |
| 480 | 1.02 | 12.5 | -- | 3.18 | -- | -- | -- | -0.572 | 11.3 | -- | -- | -- | -- |
| 374.23 | 0.901 | 12.6 | -- | -- | 3.83 | -- | -- | -0.812 | -- | -18.2 | 381 | 0.437 | 15.3 |
| 1113.69 | 1.56 | 12.5 | -- | -- | -- | -- | -- | -0.594 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 269.94 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 4 | 272.78 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 6 |
| 11 | 279.17 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 15 |
| 13 | 280.49 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 16 |
| 21 | 282.25 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 13 | 4 |
| 30 | 285.27 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 12 | 6 |
| 32 | 285.47 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 8 | 15 |
| 37 | 286.17 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 14 | 6 |
| 39 | 286.28 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 2 | 18 |
| 48 | 288.56 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 6 |
| 49 | 288.56 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 6 |
| 50 | 288.79 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 14 | 6 |
| 56 | 290.22 | humidity | 50.0 | 270 | > th | dose independent | rect. | 18 | 18 |
| 62 | 290.99 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 20 |
| 64 | 291.11 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 20 |
| 66 | 291.34 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 12 | 6 |
| 67 | 291.46 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 12 | 6 |
| 73 | 291.94 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 6 |
| 76 | 291.94 | temperature | 10.0 | 270 | > th | dose independent | rect. | 18 | 18 |
| 77 | 291.95 | humidity | 90.0 | 270 | < th | dose independent | rect. | 12 | 6 |
| 79 | 292.01 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 18 |
| 82 | 292.28 | radiation | 10.0 | 270 | < th | dose dependent | sin | 15 | NA |
| 83 | 292.35 | wind | 1.0 | 270 | > th | dose independent | rect. | 12 | 6 |
| 87 | 292.61 | temperature | 15.0 | 10 | > th | dose independent | rect. | 20 | 18 |
| 93 | 293.12 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 6 |
| 98 | 293.55 | wind | 9.0 | 270 | < th | dose independent | rect. | 18 | 18 |
| 100 | 293.63 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 6 |
| 117 | 295.26 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 22 | 9 |
| 118 | 295.26 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 22 | 9 |
| 119 | 295.29 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 18 | 18 |
| 126 | 295.61 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 4 |
| 127 | 295.61 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 4 |
| 137 | 296.37 | wind | 7.0 | 270 | < th | dose independent | rect. | 22 | 9 |
| 145 | 296.99 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 15 |
| 146 | 297.01 | radiation | 1.0 | 90 | < th | dose independent | sin | 14 | NA |
| 159 | 297.81 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 20 |
| 176 | 298.62 | temperature | 10.0 | 270 | > th | dose independent | rect. | 22 | 9 |
| 177 | 298.62 | temperature | 30.0 | 270 | < th | dose independent | rect. | 22 | 9 |
| 178 | 298.62 | humidity | 50.0 | 270 | > th | dose independent | rect. | 22 | 9 |
| 180 | 298.62 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 22 | 9 |
| 181 | 298.62 | radiation | 40.0 | 270 | < th | dose independent | rect. | 22 | 9 |
| 182 | 298.62 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 15 |
| 189 | 298.80 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 4 |
| 191 | 298.80 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 13 | 4 |
| 193 | 298.80 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 20 |
| 194 | 298.83 | humidity | 90.0 | 270 | < th | dose independent | rect. | 13 | 4 |
| 229 | 299.76 | radiation | 1.0 | 270 | > th | dose independent | rect. | 11 | 20 |
| 233 | 299.91 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 4 |
| 235 | 300.03 | radiation | 40.0 | 270 | < th | dose dependent | sin | 14 | NA |
| 236 | 300.11 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 6 |
| 238 | 300.15 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 4 |
| 241 | 300.21 | radiation | 1.0 | 270 | > th | dose independent | rect. | 12 | 7 |
| 255 | 300.36 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 9 |
| 263 | 300.55 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 20 |
| 269 | 300.67 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 14 | 6 |
| 270 | 300.67 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 14 | 6 |
| 272 | 300.75 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 18 |
| 274 | 300.75 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 18 |
| 296 | 301.45 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 15 |
| 299 | 301.62 | humidity | 60.0 | 270 | > th | dose independent | rect. | 17 | 9 |
| 304 | 301.71 | temperature | 10.0 | 10 | > th | dose independent | rect. | 14 | 6 |
| 306 | 301.71 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 14 | 6 |
| 309 | 301.71 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 20 | 18 |
| 310 | 301.74 | temperature | 15.0 | 30 | > th | dose independent | rect. | 20 | 16 |
| 311 | 301.75 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 9 |
| 313 | 301.81 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 5 |
| 320 | 302.05 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 6 |
| 327 | 302.25 | wind | 1.0 | 10 | > th | dose independent | rect. | 14 | 6 |
| 356 | 302.75 | radiation | 1.0 | 270 | > th | dose independent | rect. | 13 | 4 |
| 369 | 303.16 | radiation | 40.0 | 10 | < th | dose independent | rect. | 14 | 6 |
| 372 | 303.23 | humidity | 60.0 | 270 | > th | dose independent | rect. | 17 | 6 |
| 373 | 303.24 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 20 | 18 |
| 379 | 303.45 | wind | 9.0 | 10 | < th | dose independent | rect. | 14 | 6 |
| 394 | 303.65 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 15 |
| 413 | 303.97 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 20 | 1 |
| 430 | 304.33 | radiation | 40.0 | 270 | < th | dose independent | rect. | 18 | 19 |
| 434 | 304.40 | humidity | 50.0 | 10 | > th | dose independent | rect. | 20 | 18 |
| 463 | 305.25 | wind | 1.0 | 270 | > th | dose independent | rect. | 8 | 15 |
| 477 | 305.37 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 4 |
| 479 | 305.40 | radiation | 1.0 | 90 | > th | dose independent | sin | 14 | NA |
| 494 | 305.67 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 8 | 15 |
| 495 | 305.69 | wind | 9.0 | 10 | < th | dose independent | rect. | 20 | 18 |
| 508 | 306.02 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 12 | 13 |
| 520 | 306.24 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 15 | 6 |
| 523 | 306.24 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 18 |
| 531 | 306.36 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 8 | 15 |
| 563 | 306.72 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 3 |
| 580 | 307.03 | radiation | 10.0 | 270 | < th | dose independent | rect. | 17 | 9 |
| 591 | 307.27 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 12 | 21 |
| 595 | 307.36 | wind | 1.0 | 30 | > th | dose independent | rect. | 12 | 8 |
| 597 | 307.42 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 19 |
| 598 | 307.42 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 19 |
| 604 | 307.50 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 621 | 307.64 | wind | 9.0 | 270 | < th | dose dependent | rect. | 22 | 9 |
| 631 | 307.80 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 18 |
| 633 | 307.80 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 18 |
| 634 | 307.86 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 12 | 6 |
| 636 | 307.90 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 17 | 9 |
| 637 | 307.91 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 22 | 9 |
| 641 | 308.01 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 20 | 18 |
| 642 | 308.01 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 20 | 18 |
| 652 | 308.25 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 17 | 6 |
| 653 | 308.26 | wind | 1.0 | 270 | > th | dose independent | rect. | 18 | 5 |
| 661 | 308.38 | wind | 9.0 | 270 | < th | dose dependent | rect. | 13 | 4 |
| 690 | 309.06 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 15 |
| 691 | 309.06 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 702 | 309.22 | humidity | 70.0 | 270 | < th | dose independent | rect. | 13 | 5 |
| 704 | 309.24 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 6 |
| 718 | 309.64 | humidity | 80.0 | 90 | < th | dose dependent | sin | 15 | NA |
| 727 | 309.89 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 12 | 8 |
| 737 | 310.08 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 14 | 6 |
| 738 | 310.09 | temperature | 10.0 | 30 | > th | dose independent | rect. | 12 | 8 |
| 742 | 310.09 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 20 | 16 |
| 746 | 310.15 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 13 | 8 |
| 749 | 310.15 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 16 |
| 752 | 310.15 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 16 |
| 782 | 310.46 | humidity | 50.0 | 30 | > th | dose independent | rect. | 20 | 16 |
| 801 | 310.68 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 18 | 5 |
| 807 | 310.75 | wind | 9.0 | 30 | < th | dose independent | rect. | 12 | 8 |
| 824 | 310.93 | wind | 1.0 | 270 | > th | dose independent | rect. | 18 | 18 |
| 837 | 311.14 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 23 | 8 |
| 865 | 311.63 | temperature | 15.0 | 270 | > th | dose independent | rect. | 2 | 15 |
| 867 | 311.65 | radiation | 1.0 | 270 | < th | dose independent | rect. | 18 | 5 |
| 877 | 311.87 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 4 |
| 882 | 311.92 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 16 |
| 883 | 311.92 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 16 |
| 902 | 312.21 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 20 | 16 |
| 920 | 312.51 | wind | 9.0 | 30 | < th | dose independent | rect. | 20 | 16 |
| 926 | 312.66 | radiation | 1.0 | 270 | > th | dose dependent | sin | 14 | NA |
| 937 | 312.82 | temperature | 15.0 | 270 | > th | dose independent | rect. | 23 | 19 |
| 953 | 313.07 | radiation | 10.0 | 270 | < th | dose independent | rect. | 8 | 16 |
| 967 | 313.18 | radiation | 1.0 | 270 | > th | dose independent | sin | 17 | NA |
| 972 | 313.25 | radiation | 40.0 | 270 | < th | dose independent | rect. | 8 | 15 |
| 988 | 313.46 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 4 |
| 995 | 313.56 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 7 | 6 |