Os06g0316000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0316000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 95.8 | 0.46 | 14.1 | -0.862 | 1.81 | -0.784 | 0.346 | 0.317 | -0.239 | 19.5 | 1010 | 12292 | -- | -- |
| 96.03 | 0.456 | 14.1 | -0.753 | 1.81 | -0.846 | 0.299 | -- | -0.208 | 19.5 | 1009 | 12279 | -- | -- |
| 95.88 | 0.456 | 14.1 | -0.868 | 1.81 | -0.844 | -- | 0.392 | -0.235 | 19.5 | 1008 | 12270 | -- | -- |
| 96.33 | 0.457 | 14.1 | -0.738 | 1.81 | -0.844 | -- | -- | -0.206 | 19.5 | 1009 | 12281 | -- | -- |
| 269.88 | 0.765 | 14.1 | -1.04 | -- | -0.903 | -- | 0.745 | -0.207 | -- | 1009 | 21993 | -- | -- |
| 123.35 | 0.521 | 14.1 | -0.406 | 1.8 | -- | 0.358 | -- | 0.053 | 19.5 | -- | -- | -- | -- |
| 123.7 | 0.521 | 14.1 | -0.415 | 1.81 | -- | -- | -- | 0.0537 | 19.5 | -- | -- | -- | -- |
| 271.15 | 0.767 | 14.1 | -0.774 | -- | -0.79 | -- | -- | -0.237 | -- | 1009 | 12313 | -- | -- |
| 108.74 | 0.486 | 14.1 | -- | 1.85 | -0.877 | -- | -- | 0.0137 | 19.5 | 1005 | 12909 | -- | -- |
| 297.93 | 0.807 | 14 | -0.442 | -- | -- | -- | -- | 0.0252 | -- | -- | -- | -- | -- |
| 128.23 | 0.53 | 14.1 | -- | 1.81 | -- | -- | -- | 0.0999 | 19.5 | -- | -- | -- | -- |
| 283.08 | 0.784 | 14 | -- | -- | -0.912 | -- | -- | -0.00177 | -- | 1002 | 13652 | -- | -- |
| 303.09 | 0.813 | 14 | -- | -- | -- | -- | -- | 0.0742 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 91.00 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 15 | 91.29 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 16 | 91.48 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 19 | 92.73 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 23 | 10 |
| 26 | 92.97 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 3 |
| 28 | 93.10 | wind | 7.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 30 | 93.25 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 38 | 93.56 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 5 |
| 44 | 94.03 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 46 | 94.05 | wind | 7.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 50 | 94.19 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 51 | 94.19 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 52 | 94.19 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 4 |
| 56 | 94.23 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 70 | 94.40 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 85 | 94.50 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 86 | 94.50 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 94 | 94.55 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 96 | 94.56 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 100 | 94.58 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 101 | 94.58 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 104 | 94.62 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 106 | 94.62 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 132 | 94.76 | radiation | 30.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 152 | 94.86 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 158 | 94.88 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 18 | 5 |
| 159 | 94.88 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 17 | 7 |
| 160 | 94.88 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 17 | 7 |
| 168 | 94.90 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 169 | 94.90 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 19 | 3 |
| 170 | 94.90 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 188 | 94.96 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 193 | 94.97 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 197 | 94.98 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 208 | 95.00 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 16 | 6 |
| 227 | 95.05 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 249 | 95.09 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 272 | 95.13 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 316 | 95.20 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 10 | 13 |
| 324 | 95.21 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 15 | 14 |
| 327 | 95.22 | atmosphere | 1000.0 | 14400 | > th | dose dependent | sin | 17 | NA |
| 357 | 95.24 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 386 | 95.26 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 407 | 95.27 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 4 | 19 |
| 433 | 95.29 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 443 | 95.29 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 23 | 14 |
| 450 | 95.29 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 451 | 95.29 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 456 | 95.29 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 21 | 10 |
| 495 | 95.31 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 10 | 19 |
| 523 | 95.32 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 3 | 4 |
| 550 | 95.33 | atmosphere | 1010.0 | 14400 | > th | dose dependent | sin | 20 | NA |
| 595 | 95.34 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 21 | 8 |
| 609 | 95.35 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 634 | 95.36 | atmosphere | 1015.0 | 14400 | < th | dose independent | sin | 16 | NA |
| 649 | 95.36 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 6 | 22 |
| 674 | 95.38 | atmosphere | 1015.0 | 14400 | > th | dose independent | sin | 16 | NA |
| 678 | 95.38 | atmosphere | 1000.0 | 14400 | > th | dose dependent | no | NA | NA |
| 715 | 95.39 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 23 | 23 |
| 717 | 95.40 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 719 | 95.40 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 12 | 9 |
| 733 | 95.40 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 21 | 23 |
| 743 | 95.41 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 19 | 23 |
| 750 | 95.42 | atmosphere | 1005.0 | 14400 | > th | dose dependent | sin | 9 | NA |
| 771 | 95.43 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 801 | 95.44 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 3 | 8 |
| 829 | 95.46 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 10 | 15 |
| 992 | 95.54 | radiation | 30.0 | 43200 | < th | dose independent | sin | 8 | NA |