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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0314600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : SAM dependent carboxyl methyltransferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.16 (0.0456) R2 : 0.0736
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.45 (0.244) R2dE : 0.0725 R2E : 0.0732
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0357 (0.0962) R2dN8 : 0.000363 R2N8 : 0.00109
σ : 0.855
deviance : 337.34
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 6.087
memory length : 26
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 7.48
open length of G : 10.2

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
324.82 0.847 3.16 -0.0269 0.111 1.26 0.288 -3.98 -0.0603 5.63 8.831 22 7.21 10.1
335.05 0.853 3.14 0.0223 0.175 1.46 0.562 -- -0.0386 5.62 6.09 29 7.45 10.3
324.98 0.84 3.16 -0.0241 0.108 1.26 -- -4.05 -0.0566 6.52 8.83 21 7.21 10.1
336.27 0.854 3.14 0.0147 0.169 1.44 -- -- -0.0342 6.8 6.08 29 7.47 10.3
325.62 0.84 3.16 -0.0184 -- 1.27 -- -4.02 -0.0584 -- 8.7 21 7.23 10.1
360.43 0.89 3.16 -0.0139 0.109 -- -0.807 -- -0.0838 14.4 -- -- -- --
362.12 0.891 3.16 -0.0369 0.148 -- -- -- -0.0899 11.1 -- -- -- --
337.39 0.855 3.15 0.00165 -- 1.47 -- -- -0.0346 -- 6.09 26 7.47 10.2
335.93 0.854 3.15 -- 0.185 1.46 -- -- -0.0341 6.47 6.084 26 7.49 10.2
363.49 0.891 3.17 -0.0404 -- -- -- -- -0.0912 -- -- -- -- --
362.16 0.89 3.16 -- 0.148 -- -- -- -0.0858 11.1 -- -- -- --
337.34 0.855 3.16 -- -- 1.45 -- -- -0.0357 -- 6.087 26 7.48 10.2
363.53 0.89 3.17 -- -- -- -- -- -0.0867 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 329.30 radiation 10 30 < th dose independent rect. 7 10
3 331.70 radiation 10 90 < th dose independent rect. 7 3
5 333.52 radiation 10 30 < th dose dependent rect. 7 10
6 333.78 radiation 10 90 < th dose independent rect. 8 1
7 333.85 radiation 10 10 < th dose independent rect. 7 4
21 335.36 wind 1 90 < th dose independent rect. 16 2
24 335.47 radiation 20 90 < th dose dependent rect. 7 3
26 335.50 wind 1 90 < th dose dependent rect. 16 1
37 336.68 radiation 10 10 < th dose dependent rect. 8 2
46 337.30 humidity 50 10 > th dose dependent rect. 14 21
62 337.65 humidity 60 90 > th dose independent rect. 14 20
68 338.14 temperature 25 720 > th dose independent rect. 6 2
104 339.23 temperature 20 4320 > th dose dependent rect. 6 1
113 339.50 temperature 20 4320 < th dose independent rect. 4 2
114 339.52 temperature 20 4320 > th dose independent rect. 4 2
118 339.65 wind 1 43200 < th dose independent rect. 23 2
129 339.83 radiation 10 10 < th dose independent rect. 7 18
134 339.92 temperature 20 4320 > th dose dependent rect. 3 4
154 340.17 temperature 20 4320 > th dose dependent rect. 3 1
179 340.64 humidity 50 10 > th dose dependent rect. 12 23
182 340.66 atmosphere 1010 4320 > th dose dependent rect. 3 2
184 340.68 temperature 20 90 < th dose dependent rect. 12 4
192 340.77 temperature 20 10 < th dose dependent rect. 12 5
237 341.22 wind 1 43200 > th dose independent rect. 23 2
256 341.43 temperature 25 1440 > th dose dependent rect. 18 2
274 341.58 radiation 1 90 < th dose independent rect. 14 1
275 341.58 radiation 1 90 < th dose dependent rect. 14 1
276 341.58 wind 1 43200 < th dose dependent rect. 23 2
333 341.87 radiation 40 10 < th dose dependent rect. 14 21
339 341.90 atmosphere 1010 4320 > th dose dependent rect. 7 1
355 341.98 temperature 30 4320 < th dose dependent rect. 2 1
370 342.03 temperature 30 4320 < th dose dependent rect. 2 4
382 342.08 wind 1 43200 > th dose independent rect. 20 6
385 342.10 temperature 25 90 < th dose dependent rect. 14 1
435 342.28 wind 1 43200 < th dose independent rect. 20 6
461 342.37 atmosphere 1010 4320 > th dose dependent sin 4 NA
488 342.49 wind 1 43200 > th dose independent rect. 18 8
505 342.53 radiation 10 10 > th dose independent rect. 10 22
521 342.57 temperature 20 90 < th dose independent rect. 12 4
528 342.58 wind 1 43200 < th dose independent rect. 18 8
551 342.67 atmosphere 1000 30 > th dose independent rect. 23 11
558 342.69 wind 1 43200 < th dose dependent rect. 20 5
615 342.87 radiation 10 270 < th dose dependent rect. 5 3
624 342.89 humidity 60 270 > th dose independent rect. 4 13
636 342.95 atmosphere 1000 720 > th dose independent rect. 22 2
641 342.96 temperature 20 30 < th dose independent rect. 14 3
647 342.97 atmosphere 1000 90 > th dose independent rect. 14 20
669 343.03 temperature 25 720 > th dose independent rect. 2 7
694 343.06 temperature 30 10 < th dose independent rect. 15 19
695 343.07 atmosphere 1010 4320 > th dose dependent rect. 11 1
700 343.07 wind 1 43200 < th dose dependent rect. 16 11
706 343.09 radiation 30 10 < th dose independent rect. 15 19
708 343.09 wind 1 14400 < th dose dependent rect. 8 3
746 343.18 wind 1 43200 < th dose dependent rect. 18 8
749 343.19 radiation 10 10 < th dose independent rect. 7 20
752 343.19 temperature 20 10 < th dose dependent rect. 10 7
785 343.29 radiation 10 270 < th dose dependent rect. 5 12
819 343.43 atmosphere 1015 4320 > th dose independent rect. 3 2
846 343.51 atmosphere 1015 4320 < th dose independent rect. 3 2
857 343.52 humidity 60 270 > th dose dependent rect. 14 2
872 343.56 atmosphere 1015 4320 > th dose independent rect. 2 4
876 343.57 radiation 10 270 < th dose dependent rect. 6 1
881 343.59 atmosphere 1015 4320 < th dose independent rect. 2 5
891 343.61 humidity 50 90 > th dose dependent rect. 22 12
894 343.62 radiation 30 10 < th dose independent rect. 23 11
898 343.63 humidity 60 10 > th dose dependent rect. 16 1
903 343.64 atmosphere 1000 270 > th dose independent rect. 11 23
936 343.71 humidity 70 10 > th dose independent rect. 14 3
963 343.78 temperature 25 720 < th dose independent rect. 24 9
964 343.78 temperature 20 4320 > th dose dependent sin 11 NA
993 343.87 radiation 30 90 < th dose independent rect. 22 12