Os06g0314100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os06g0314100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 177.71 | 0.626 | 4.99 | 2.48 | 1.76 | 1.6 | 0.208 | -0.0804 | 0.531 | 18.7 | 25.81 | 240 | -- | -- |
| 177.72 | 0.621 | 4.99 | 2.46 | 1.76 | 1.61 | 0.224 | -- | 0.529 | 18.7 | 25.8 | 238 | -- | -- |
| 177.81 | 0.621 | 4.99 | 2.48 | 1.77 | 1.6 | -- | -0.147 | 0.535 | 18.6 | 25.85 | 238 | -- | -- |
| 177.85 | 0.621 | 4.99 | 2.46 | 1.76 | 1.61 | -- | -- | 0.529 | 18.6 | 25.8 | 238 | -- | -- |
| 304.47 | 0.817 | 4.98 | 2.34 | -- | 1.65 | -- | 0.0513 | 0.366 | -- | 23.02 | 39 | -- | -- |
| 215.45 | 0.688 | 5.06 | 2.05 | 1.54 | -- | 0.256 | -- | 0.182 | 19.1 | -- | -- | -- | -- |
| 215.62 | 0.688 | 5.06 | 2.04 | 1.55 | -- | -- | -- | 0.183 | 19.1 | -- | -- | -- | -- |
| 304.39 | 0.816 | 4.98 | 2.34 | -- | 1.64 | -- | -- | 0.369 | -- | 23.1 | 16 | -- | -- |
| 320.77 | 0.839 | 5.09 | -- | 1.54 | 0.554 | -- | -- | 0.0545 | 18.9 | 25.37 | 107 | -- | -- |
| 341.72 | 0.864 | 5.03 | 2.02 | -- | -- | -- | -- | 0.155 | -- | -- | -- | -- | -- |
| 325.82 | 0.844 | 5.11 | -- | 1.52 | -- | -- | -- | -0.045 | 19.2 | -- | -- | -- | -- |
| 438.73 | 0.979 | 5.06 | -- | -- | 0.848 | -- | -- | 0.017 | -- | 22.78 | 10 | -- | -- |
| 448.9 | 0.989 | 5.08 | -- | -- | -- | -- | -- | -0.0682 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 172.92 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 22 |
| 6 | 176.05 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 21 |
| 7 | 176.15 | temperature | 20 | 30 | > th | dose independent | rect. | 7 | 23 |
| 8 | 176.47 | temperature | 25 | 270 | < th | dose dependent | rect. | 2 | 22 |
| 11 | 176.65 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 23 |
| 12 | 176.73 | temperature | 25 | 270 | < th | dose dependent | rect. | 20 | 22 |
| 26 | 177.34 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 12 |
| 27 | 177.45 | temperature | 25 | 90 | < th | dose dependent | rect. | 4 | 23 |
| 38 | 177.71 | temperature | 20 | 270 | < th | dose independent | rect. | 20 | 22 |
| 40 | 177.80 | temperature | 10 | 90 | > th | dose dependent | sin | 7 | NA |
| 47 | 177.97 | temperature | 20 | 30 | < th | dose independent | rect. | 4 | 22 |
| 67 | 178.25 | temperature | 30 | 270 | < th | dose dependent | sin | 9 | NA |
| 79 | 178.38 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 81 | 178.42 | humidity | 70 | 14400 | > th | dose dependent | rect. | 22 | 9 |
| 83 | 178.42 | temperature | 25 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 86 | 178.44 | humidity | 50 | 14400 | > th | dose dependent | rect. | 22 | 9 |
| 95 | 178.68 | temperature | 25 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 96 | 178.74 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 108 | 178.86 | temperature | 30 | 90 | < th | dose dependent | sin | 7 | NA |
| 141 | 179.19 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 14 |
| 147 | 179.23 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 153 | 179.27 | temperature | 20 | 270 | < th | dose independent | rect. | 13 | 23 |
| 176 | 179.48 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 180 | 179.50 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 2 |
| 194 | 179.58 | humidity | 60 | 14400 | > th | dose dependent | rect. | 21 | 7 |
| 204 | 179.61 | humidity | 80 | 14400 | > th | dose dependent | rect. | 1 | 7 |
| 209 | 179.63 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 2 |
| 214 | 179.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 14 |
| 215 | 179.71 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 15 |
| 221 | 179.73 | temperature | 20 | 30 | > th | dose independent | rect. | 9 | 19 |
| 224 | 179.74 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 15 |
| 225 | 179.75 | humidity | 50 | 14400 | > th | dose dependent | rect. | 22 | 5 |
| 237 | 179.81 | temperature | 20 | 270 | < th | dose independent | rect. | 7 | 23 |
| 242 | 179.83 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 14 |
| 246 | 179.84 | humidity | 50 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 247 | 179.85 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 10 |
| 278 | 179.94 | humidity | 80 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 281 | 179.97 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 6 |
| 287 | 179.98 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 6 |
| 290 | 179.99 | temperature | 20 | 270 | < th | dose independent | rect. | 10 | 23 |
| 299 | 180.04 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 10 |
| 303 | 180.05 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 308 | 180.06 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 4 |
| 326 | 180.11 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 23 |
| 371 | 180.25 | temperature | 20 | 30 | > th | dose independent | no | NA | NA |
| 375 | 180.26 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 378 | 180.28 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 388 | 180.33 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 394 | 180.35 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 520 | 180.71 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 531 | 180.74 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 569 | 180.87 | temperature | 20 | 30 | < th | dose independent | rect. | 17 | 23 |
| 571 | 180.88 | temperature | 20 | 30 | < th | dose independent | no | NA | NA |
| 574 | 180.88 | temperature | 20 | 30 | < th | dose independent | rect. | 11 | 23 |
| 575 | 180.88 | temperature | 20 | 30 | < th | dose independent | rect. | 15 | 23 |
| 581 | 180.90 | temperature | 20 | 30 | < th | dose independent | rect. | 7 | 23 |
| 595 | 180.93 | temperature | 20 | 30 | < th | dose independent | rect. | 9 | 23 |
| 600 | 180.94 | temperature | 20 | 30 | < th | dose independent | rect. | 13 | 23 |
| 689 | 181.14 | temperature | 20 | 30 | < th | dose independent | rect. | 1 | 23 |
| 700 | 181.19 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 709 | 181.22 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 759 | 181.37 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 13 |
| 763 | 181.38 | humidity | 80 | 14400 | > th | dose dependent | sin | 9 | NA |
| 809 | 181.48 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 874 | 181.66 | temperature | 20 | 30 | > th | dose independent | rect. | 9 | 23 |
| 999 | 181.95 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 13 |