Os06g0313200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0313200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 170.74 | 0.614 | 6.93 | 1.02 | 1.42 | -1.98 | -2.21 | 1.13 | 1.01 | 19.6 | 24.61 | 12 | 22.4 | -- |
| 170.99 | 0.614 | 6.95 | 0.916 | 1.43 | -1.98 | -2.29 | -- | 0.97 | 19.6 | 24.5 | 12 | 22 | -- |
| 182.97 | 0.635 | 6.93 | 1.14 | 1.41 | -2.01 | -- | 2.36 | 1.01 | 19.9 | 24.61 | 12 | 22.4 | -- |
| 185.53 | 0.639 | 6.95 | 0.96 | 1.44 | -1.87 | -- | -- | 0.956 | 19.9 | 24.5 | 12 | 22 | -- |
| 189.9 | 0.642 | 6.89 | 1.24 | -- | -2.61 | -- | 2.56 | 1.03 | -- | 11.21 | 72 | 22.3 | -- |
| 222.79 | 0.7 | 7.01 | 0.722 | 1.89 | -- | -1.56 | -- | 0.779 | 20.8 | -- | -- | -- | -- |
| 230.64 | 0.711 | 7.01 | 0.771 | 1.89 | -- | -- | -- | 0.778 | 21 | -- | -- | -- | -- |
| 200.36 | 0.659 | 6.91 | 1.05 | -- | -2.6 | -- | -- | 0.985 | -- | 11.5 | 67 | 22.2 | -- |
| 209.28 | 0.677 | 6.98 | -- | 1.47 | -1.67 | -- | -- | 0.83 | 20.1 | 24.6 | 9 | 22.3 | -- |
| 435.82 | 0.975 | 6.96 | 0.774 | -- | -- | -- | -- | 0.766 | -- | -- | -- | -- | -- |
| 246.32 | 0.734 | 7.03 | -- | 1.89 | -- | -- | -- | 0.692 | 21 | -- | -- | -- | -- |
| 227.52 | 0.703 | 6.92 | -- | -- | -2.43 | -- | -- | 0.876 | -- | 7.649 | 53 | 21.9 | -- |
| 451.62 | 0.992 | 6.98 | -- | -- | -- | -- | -- | 0.68 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 171.58 | temperature | 25 | 10 | > th | dose dependent | sin | 4 | NA |
| 13 | 175.49 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 9 |
| 16 | 176.47 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 21 |
| 18 | 176.59 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 21 | 176.97 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 13 |
| 31 | 177.54 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 33 | 177.56 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 335 | 185.01 | temperature | 30 | 30 | < th | dose dependent | rect. | 2 | 14 |
| 349 | 185.45 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 1 |
| 381 | 186.88 | wind | 5 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 398 | 187.21 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 5 |
| 410 | 187.43 | temperature | 30 | 30 | < th | dose dependent | sin | 3 | NA |
| 413 | 187.51 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 7 |
| 488 | 188.22 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 2 |
| 524 | 188.54 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 542 | 188.80 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 16 |
| 643 | 190.10 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 644 | 190.11 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 7 |
| 665 | 190.33 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 9 |
| 709 | 190.86 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 16 |
| 717 | 191.03 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 17 |
| 726 | 191.13 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 15 |
| 743 | 191.25 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 763 | 191.44 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 2 |
| 770 | 191.48 | radiation | 20 | 270 | < th | dose dependent | rect. | 22 | 16 |
| 788 | 191.69 | temperature | 25 | 10 | > th | dose dependent | rect. | 2 | 22 |
| 821 | 191.99 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 840 | 192.10 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 922 | 192.48 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 14 |
| 977 | 192.91 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 10 |
| 997 | 193.02 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 5 |
| 999 | 193.03 | temperature | 25 | 270 | > th | dose independent | sin | 4 | NA |