Os06g0312900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0312900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 81.15 | 0.423 | 8.84 | -1.42 | 0.537 | -1.71 | 0.163 | 1.68 | 0.61 | 2.16 | 25.4 | 2384 | -- | -- |
| 83.22 | 0.425 | 8.78 | -1.07 | 0.548 | -1.87 | 0.0498 | -- | 0.715 | 2.11 | 24 | 2373 | -- | -- |
| 81.02 | 0.419 | 8.83 | -1.36 | 0.559 | -1.72 | -- | 1.41 | 0.632 | 2.09 | 24.66 | 2343 | -- | -- |
| 81.76 | 0.421 | 8.79 | -1.3 | 0.616 | -2.15 | -- | -- | 0.661 | 1.9 | 23.16 | 3561 | -- | -- |
| 97.12 | 0.459 | 8.86 | -1.57 | -- | -1.83 | -- | 2.11 | 0.552 | -- | 27.29 | 2463 | -- | -- |
| 147.12 | 0.569 | 8.68 | -0.293 | 0.693 | -- | -0.12 | -- | 1.17 | 1.73 | -- | -- | -- | -- |
| 147.18 | 0.568 | 8.68 | -0.289 | 0.693 | -- | -- | -- | 1.17 | 1.74 | -- | -- | -- | -- |
| 100.51 | 0.467 | 8.79 | -1.12 | -- | -2.04 | -- | -- | 0.675 | -- | 24.46 | 2456 | -- | -- |
| 106.26 | 0.48 | 8.75 | -- | 0.627 | -1.58 | -- | -- | 0.894 | 2.05 | 24.41 | 1987 | -- | -- |
| 176.4 | 0.621 | 8.68 | -0.261 | -- | -- | -- | -- | 1.19 | -- | -- | -- | -- | -- |
| 149.38 | 0.572 | 8.68 | -- | 0.688 | -- | -- | -- | 1.21 | 1.73 | -- | -- | -- | -- |
| 123.06 | 0.517 | 8.74 | -- | -- | -1.76 | -- | -- | 0.888 | -- | 25.64 | 1028 | -- | -- |
| 178.19 | 0.623 | 8.67 | -- | -- | -- | -- | -- | 1.22 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.08 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 2 | 72.36 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 3 | 72.73 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 18 |
| 11 | 73.32 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 11 |
| 14 | 73.33 | humidity | 60 | 43200 | < th | dose dependent | rect. | 4 | 9 |
| 16 | 73.37 | humidity | 60 | 43200 | < th | dose dependent | sin | 8 | NA |
| 26 | 73.69 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 28 | 73.76 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 32 | 73.86 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 43 | 74.06 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 45 | 74.08 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 52 | 74.15 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 54 | 74.16 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 58 | 74.19 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 88 | 74.99 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 15 |
| 91 | 75.02 | humidity | 50 | 43200 | > th | dose independent | rect. | 20 | 16 |
| 96 | 75.10 | humidity | 50 | 43200 | > th | dose independent | rect. | 20 | 20 |
| 107 | 75.31 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 110 | 75.34 | humidity | 50 | 43200 | > th | dose independent | rect. | 4 | 12 |
| 121 | 75.41 | humidity | 50 | 43200 | > th | dose independent | rect. | 5 | 7 |
| 130 | 75.52 | humidity | 50 | 43200 | > th | dose independent | sin | 4 | NA |
| 158 | 75.69 | humidity | 50 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 163 | 75.73 | humidity | 50 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 223 | 76.05 | humidity | 50 | 43200 | > th | dose independent | rect. | 4 | 20 |
| 226 | 76.06 | humidity | 50 | 43200 | > th | dose independent | rect. | 4 | 18 |
| 242 | 76.08 | humidity | 50 | 43200 | > th | dose independent | no | NA | NA |
| 243 | 76.08 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 3 |
| 247 | 76.08 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 250 | 76.09 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 261 | 76.09 | humidity | 50 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 267 | 76.11 | humidity | 50 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 322 | 76.27 | humidity | 50 | 43200 | < th | dose independent | rect. | 20 | 20 |
| 328 | 76.29 | humidity | 50 | 43200 | < th | dose independent | rect. | 7 | 8 |
| 332 | 76.31 | humidity | 50 | 43200 | < th | dose independent | sin | 4 | NA |
| 403 | 76.43 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 13 | 9 |
| 451 | 76.49 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 12 | 10 |
| 463 | 76.50 | humidity | 50 | 43200 | < th | dose independent | rect. | 17 | 22 |
| 472 | 76.52 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 480 | 76.53 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 545 | 76.60 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 549 | 76.61 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 16 | 5 |
| 628 | 76.71 | humidity | 50 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 676 | 76.76 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 18 |
| 694 | 76.78 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 756 | 76.87 | humidity | 50 | 43200 | < th | dose dependent | rect. | 5 | 17 |
| 762 | 76.87 | humidity | 50 | 43200 | < th | dose dependent | rect. | 10 | 23 |
| 792 | 76.89 | humidity | 50 | 43200 | < th | dose dependent | no | NA | NA |
| 904 | 76.96 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 911 | 76.98 | humidity | 50 | 43200 | < th | dose independent | rect. | 4 | 18 |
| 928 | 77.00 | humidity | 50 | 43200 | < th | dose independent | no | NA | NA |
| 945 | 77.00 | humidity | 50 | 43200 | < th | dose independent | rect. | 7 | 23 |
| 964 | 77.02 | humidity | 50 | 43200 | < th | dose independent | rect. | 10 | 23 |
| 965 | 77.02 | radiation | 1 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 988 | 77.04 | radiation | 1 | 14400 | < th | dose dependent | sin | 8 | NA |