Os06g0308300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 65kD microtubule associated protein.
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Os06g0308300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 65kD microtubule associated protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 138.43 | 0.553 | 6.72 | -0.579 | 2.32 | -2.85 | 0.133 | -1.82 | 0.393 | 21 | 24.01 | 4798 | -- | -- |
| 141.06 | 0.553 | 6.78 | -0.808 | 2.33 | -2.46 | 0.189 | -- | 0.353 | 21 | 24.94 | 4792 | -- | -- |
| 138.36 | 0.548 | 6.72 | -0.581 | 2.32 | -2.9 | -- | -1.96 | 0.391 | 21 | 23.8 | 4782 | -- | -- |
| 141.1 | 0.553 | 6.78 | -0.81 | 2.32 | -2.46 | -- | -- | 0.353 | 21 | 25.07 | 4786 | -- | -- |
| 431.22 | 0.967 | 6.66 | -0.266 | -- | -2.67 | -- | -1.83 | 0.469 | -- | 27.66 | 3652 | -- | -- |
| 233.47 | 0.716 | 6.64 | 0.446 | 2.35 | -- | 0.269 | -- | 0.97 | 21.1 | -- | -- | -- | -- |
| 233.71 | 0.716 | 6.64 | 0.437 | 2.35 | -- | -- | -- | 0.97 | 21.1 | -- | -- | -- | -- |
| 310.71 | 0.821 | 6.71 | -0.545 | -- | -3.93 | -- | -- | 0.361 | -- | 62.87 | 719 | -- | -- |
| 150.43 | 0.571 | 6.73 | -- | 2.3 | -1.9 | -- | -- | 0.59 | 20.8 | 31.12 | 2700 | -- | -- |
| 552.04 | 1.1 | 6.58 | 0.442 | -- | -- | -- | -- | 0.956 | -- | -- | -- | -- | -- |
| 238.75 | 0.723 | 6.65 | -- | 2.35 | -- | -- | -- | 0.921 | 21.1 | -- | -- | -- | -- |
| 317.72 | 0.83 | 6.69 | -- | -- | -3.72 | -- | -- | 0.447 | -- | 72.5 | 711 | -- | -- |
| 557.2 | 1.1 | 6.59 | -- | -- | -- | -- | -- | 0.907 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 124.44 | wind | 9 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 2 | 125.05 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 18 |
| 3 | 125.17 | radiation | 40 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 20 | 126.11 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 22 | 126.22 | humidity | 60 | 43200 | < th | dose dependent | rect. | 6 | 6 |
| 23 | 126.22 | humidity | 60 | 43200 | < th | dose dependent | rect. | 4 | 8 |
| 25 | 126.25 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 10 |
| 32 | 126.60 | wind | 9 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 52 | 128.05 | wind | 9 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 54 | 128.51 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 65 | 128.90 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 75 | 128.93 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 78 | 129.03 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 85 | 129.89 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 86 | 129.98 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 9 |
| 89 | 130.18 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 94 | 130.20 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 104 | 130.50 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 106 | 130.55 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 13 |
| 109 | 130.63 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 110 | 130.64 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 20 |
| 115 | 130.72 | humidity | 60 | 43200 | < th | dose dependent | sin | 8 | NA |
| 116 | 130.85 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 19 |
| 123 | 131.05 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 20 |
| 126 | 131.15 | wind | 7 | 43200 | > th | dose independent | rect. | 8 | 14 |
| 128 | 131.19 | humidity | 50 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 130 | 131.21 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 11 |
| 132 | 131.27 | temperature | 20 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 133 | 131.28 | wind | 7 | 43200 | > th | dose independent | rect. | 8 | 11 |
| 138 | 131.36 | wind | 7 | 43200 | > th | dose dependent | sin | 19 | NA |
| 151 | 131.39 | wind | 7 | 43200 | < th | dose independent | rect. | 8 | 14 |
| 156 | 131.48 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 176 | 131.57 | wind | 7 | 43200 | > th | dose independent | sin | 22 | NA |
| 181 | 131.63 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 185 | 131.69 | wind | 9 | 43200 | < th | dose independent | sin | 20 | NA |
| 196 | 131.79 | humidity | 50 | 43200 | > th | dose independent | rect. | 4 | 8 |
| 213 | 131.89 | humidity | 50 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 216 | 131.91 | wind | 9 | 43200 | > th | dose independent | rect. | 12 | 19 |
| 218 | 131.92 | humidity | 50 | 43200 | > th | dose independent | rect. | 1 | 11 |
| 225 | 131.94 | wind | 9 | 43200 | < th | dose independent | rect. | 12 | 19 |
| 245 | 132.03 | wind | 7 | 43200 | < th | dose independent | sin | 22 | NA |
| 302 | 132.27 | wind | 7 | 43200 | > th | dose independent | rect. | 4 | 18 |
| 313 | 132.30 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 15 |
| 317 | 132.32 | humidity | 60 | 43200 | < th | dose independent | rect. | 24 | 11 |
| 343 | 132.42 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 364 | 132.53 | wind | 7 | 43200 | < th | dose independent | rect. | 4 | 18 |
| 395 | 132.67 | humidity | 50 | 43200 | < th | dose independent | rect. | 4 | 8 |
| 397 | 132.68 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 15 |
| 417 | 132.76 | radiation | 40 | 14400 | < th | dose independent | rect. | 15 | 18 |
| 442 | 132.83 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 450 | 132.84 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 5 |
| 460 | 132.88 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 9 |
| 518 | 133.14 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 12 |
| 521 | 133.15 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 12 |
| 579 | 133.33 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 605 | 133.38 | wind | 7 | 43200 | > th | dose independent | rect. | 21 | 21 |
| 648 | 133.51 | wind | 7 | 43200 | < th | dose independent | rect. | 21 | 21 |
| 728 | 133.79 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 796 | 133.99 | temperature | 10 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 845 | 134.09 | wind | 7 | 43200 | < th | dose independent | rect. | 21 | 18 |
| 862 | 134.15 | temperature | 30 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 883 | 134.23 | temperature | 20 | 43200 | < th | dose dependent | sin | 6 | NA |
| 898 | 134.27 | wind | 7 | 43200 | > th | dose independent | rect. | 21 | 18 |
| 906 | 134.30 | radiation | 1 | 43200 | < th | dose independent | sin | 14 | NA |
| 926 | 134.38 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 22 |
| 974 | 134.48 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 17 |
| 976 | 134.48 | wind | 7 | 43200 | > th | dose independent | rect. | 16 | 23 |
| 977 | 134.48 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 980 | 134.49 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 19 |
| 989 | 134.52 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 18 |