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Os06g0308200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to 60S ribosomal protein L15.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.35 (0.0244) R2 : 0.639
β1 : 2.29 (0.0893) R2dD : 0.54 R2D : 0.476
β2 : 0.812 (0.0625) R2dC : 0.134 R2C : 0.111
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.298 (0.052) R2dN8 : 0.0348 R2N8 : -0.0224
σ : 0.458
deviance : 95.78
__
_____
C
peak time of C : 16.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
83.62 0.43 7.36 2.32 0.713 -0.66 1.44 -0.381 0.266 17.3 39.49 73 -- --
83.86 0.427 7.36 2.32 0.712 -0.624 1.47 -- 0.269 17.2 39.5 72 -- --
88.7 0.439 7.36 2.31 0.728 -0.633 -- -0.5 0.272 17.2 39.49 69 -- --
89.26 0.44 7.36 2.32 0.727 -0.601 -- -- 0.28 17.2 39.49 69 -- --
96.01 0.456 7.36 2.26 -- -0.779 -- -0.509 0.2 -- 11.64 396 -- --
91.46 0.448 7.35 2.28 0.805 -- 1.27 -- 0.291 16.5 -- -- -- --
95.78 0.458 7.35 2.29 0.812 -- -- -- 0.298 16.4 -- -- -- --
97.44 0.46 7.36 2.25 -- -0.763 -- -- 0.201 -- 2.08 513 -- --
222.57 0.695 7.4 -- 0.598 -0.426 -- -- 0.0503 16.8 20.03 104 -- --
131.18 0.535 7.34 2.26 -- -- -- -- 0.277 -- -- -- -- --
233.75 0.715 7.41 -- 0.768 -- -- -- 0.0432 16.4 -- -- -- --
222.11 0.694 7.44 -- -- -0.791 -- -- -0.0771 -- 10.47 416 -- --
265.42 0.76 7.4 -- -- -- -- -- 0.0263 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 80.94 temperature 30 270 < th dose independent rect. 11 8
3 81.22 radiation 40 270 > th dose independent rect. 9 1
4 81.56 temperature 20 10 > th dose dependent rect. 8 13
5 81.58 temperature 15 90 > th dose dependent rect. 8 19
6 81.59 humidity 50 270 > th dose independent rect. 11 9
29 81.79 temperature 15 90 > th dose dependent rect. 8 13
31 81.83 radiation 30 270 > th dose dependent rect. 9 1
33 81.88 temperature 30 90 < th dose independent rect. 13 19
39 81.98 radiation 1 270 > th dose dependent rect. 9 1
43 82.01 wind 3 4320 < th dose dependent rect. 3 1
44 82.03 temperature 15 10 > th dose dependent rect. 8 18
50 82.15 temperature 15 10 > th dose dependent rect. 8 20
54 82.23 temperature 30 270 < th dose independent rect. 2 15
55 82.23 temperature 30 270 < th dose independent rect. 2 17
57 82.24 temperature 20 90 > th dose dependent rect. 8 6
65 82.32 temperature 20 270 > th dose dependent rect. 9 1
72 82.36 temperature 30 270 < th dose independent rect. 10 22
83 82.43 temperature 30 270 < th dose independent rect. 11 20
88 82.46 temperature 20 10 > th dose dependent rect. 9 5
96 82.51 humidity 60 90 > th dose independent rect. 13 19
106 82.56 humidity 60 10 > th dose independent rect. 13 20
110 82.59 humidity 90 720 < th dose dependent rect. 20 2
161 82.76 temperature 30 10 < th dose independent rect. 12 21
173 82.81 temperature 20 270 > th dose dependent rect. 8 3
176 82.83 radiation 40 270 > th dose independent sin 11 NA
177 82.83 radiation 10 270 > th dose dependent rect. 16 18
179 82.84 humidity 50 270 > th dose independent rect. 14 16
183 82.85 temperature 20 90 > th dose dependent rect. 8 9
188 82.87 radiation 1 90 > th dose dependent rect. 8 6
199 82.90 radiation 1 90 > th dose dependent rect. 8 11
228 82.96 radiation 20 270 > th dose independent rect. 16 19
261 83.03 temperature 30 10 < th dose independent rect. 12 11
262 83.03 radiation 40 270 < th dose independent rect. 2 14
272 83.06 temperature 25 10 > th dose dependent sin 0 NA
277 83.07 temperature 30 10 < th dose independent rect. 4 15
278 83.07 radiation 40 270 < th dose independent rect. 9 22
280 83.08 humidity 90 720 < th dose independent rect. 20 3
284 83.09 humidity 60 270 > th dose independent rect. 11 20
304 83.15 radiation 40 10 < th dose independent rect. 12 11
305 83.15 temperature 25 90 > th dose dependent sin 2 NA
323 83.20 radiation 40 90 < th dose independent sin 7 NA
344 83.20 wind 3 4320 < th dose dependent rect. 2 3
346 83.21 radiation 40 90 < th dose independent rect. 11 22
407 83.29 wind 3 4320 < th dose dependent rect. 16 14
431 83.37 wind 3 4320 < th dose dependent rect. 23 7
433 83.37 radiation 1 90 > th dose dependent rect. 15 23
436 83.38 radiation 40 90 < th dose independent rect. 2 21
455 83.41 radiation 40 90 < th dose dependent rect. 2 21
492 83.51 radiation 10 270 > th dose dependent sin 10 NA
520 83.53 radiation 30 90 > th dose independent sin 7 NA
547 83.59 radiation 40 270 < th dose independent sin 11 NA
568 83.60 radiation 20 90 < th dose independent rect. 2 21
574 83.61 wind 1 4320 < th dose independent rect. 2 10
586 83.63 wind 3 4320 < th dose dependent sin 11 NA
618 83.66 radiation 1 270 > th dose dependent sin 7 NA
666 83.73 radiation 20 270 > th dose independent sin 10 NA
672 83.74 radiation 1 90 > th dose dependent sin 2 NA
681 83.75 radiation 40 270 < th dose dependent rect. 2 14
684 83.76 temperature 30 10 < th dose independent rect. 2 21
688 83.76 radiation 1 10 > th dose dependent rect. 8 11
727 83.79 atmosphere 1000 270 > th dose independent rect. 20 15
734 83.80 radiation 30 270 > th dose dependent sin 11 NA
735 83.80 wind 5 4320 < th dose dependent rect. 23 11
738 83.81 radiation 40 270 < th dose dependent sin 8 NA
747 83.83 humidity 60 10 > th dose independent rect. 13 10
755 83.84 temperature 10 10 > th dose dependent sin 22 NA
767 83.86 radiation 40 10 < th dose independent rect. 12 21
769 83.86 humidity 70 720 > th dose dependent rect. 19 8
827 83.89 wind 1 4320 > th dose independent rect. 2 10
835 83.90 wind 1 4320 < th dose independent rect. 2 4
843 83.92 wind 1 4320 > th dose independent rect. 2 4
851 83.93 radiation 30 90 > th dose independent rect. 8 6
893 83.97 temperature 25 270 > th dose independent rect. 9 1
894 83.97 temperature 15 270 > th dose independent rect. 11 9
899 83.97 wind 3 4320 < th dose dependent rect. 23 1
933 83.99 radiation 1 10 > th dose dependent rect. 8 6
954 84.02 wind 1 4320 > th dose independent rect. 3 2
966 84.03 radiation 40 10 < th dose independent rect. 4 19