Os06g0308100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Dual specificity protein phosphatase domain containing protein.
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Os06g0308100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Dual specificity protein phosphatase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12.6 | 0.167 | 11.9 | 0.204 | 0.337 | 0.314 | 0.0449 | 0.0374 | 0.268 | 6.66 | 28.84 | 1596 | -- | -- |
| 12.59 | 0.165 | 11.9 | 0.217 | 0.336 | 0.317 | 0.0454 | -- | 0.275 | 6.67 | 28.79 | 1591 | -- | -- |
| 12.59 | 0.165 | 11.9 | 0.203 | 0.336 | 0.313 | -- | 0.0441 | 0.269 | 6.68 | 28.8 | 1591 | -- | -- |
| 12.59 | 0.165 | 11.9 | 0.217 | 0.336 | 0.317 | -- | -- | 0.275 | 6.68 | 28.79 | 1591 | -- | -- |
| 14.43 | 0.177 | 11.9 | 0.175 | -- | 0.469 | -- | 0.272 | 0.273 | -- | 28.3 | 625 | -- | -- |
| 16.98 | 0.193 | 11.9 | 0.112 | 0.352 | -- | 0.0247 | -- | 0.225 | 6.71 | -- | -- | -- | -- |
| 16.98 | 0.193 | 11.9 | 0.113 | 0.352 | -- | -- | -- | 0.225 | 6.72 | -- | -- | -- | -- |
| 14.03 | 0.174 | 11.9 | 0.218 | -- | 0.438 | -- | -- | 0.294 | -- | 27.46 | 503 | -- | -- |
| 13.74 | 0.173 | 11.9 | -- | 0.34 | 0.289 | -- | -- | 0.241 | 6.66 | 29 | 1608 | -- | -- |
| 23.45 | 0.226 | 11.9 | 0.121 | -- | -- | -- | -- | 0.232 | -- | -- | -- | -- | -- |
| 17.32 | 0.195 | 11.9 | -- | 0.353 | -- | -- | -- | 0.212 | 6.7 | -- | -- | -- | -- |
| 15.3 | 0.182 | 11.9 | -- | -- | 0.412 | -- | -- | 0.273 | -- | 27.45 | 491 | -- | -- |
| 23.84 | 0.228 | 11.9 | -- | -- | -- | -- | -- | 0.218 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.68 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 9 | 2 |
| 3 | 12.68 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 5 | 12.68 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 6 | 12.69 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 14 | 12.72 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 31 | 12.75 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 7 | 7 |
| 32 | 12.75 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 33 | 12.75 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 71 | 12.80 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 3 | NA |
| 96 | 12.81 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 134 | 12.84 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 8 | 16 |
| 200 | 12.88 | temperature | 25.0 | 720 | > th | dose dependent | sin | 8 | NA |
| 251 | 12.91 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 21 |
| 271 | 12.92 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 15 | 21 |
| 276 | 12.92 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 279 | 12.93 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 17 | 5 |
| 285 | 12.93 | temperature | 25.0 | 90 | > th | dose dependent | no | NA | NA |
| 300 | 12.93 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 23 | 20 |
| 318 | 12.93 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 324 | 12.94 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 329 | 12.94 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 340 | 12.94 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 3 | 21 |
| 367 | 12.95 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 382 | 12.95 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 402 | 12.97 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 435 | 12.99 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 15 | NA |
| 500 | 13.04 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 517 | 13.05 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 12 |
| 554 | 13.06 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 16 | 7 |
| 570 | 13.06 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 575 | 13.06 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 11 |
| 604 | 13.07 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 17 | 2 |
| 639 | 13.07 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 651 | 13.07 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 669 | 13.08 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 702 | 13.10 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 16 |
| 761 | 13.13 | humidity | 70.0 | 1440 | > th | dose independent | sin | 13 | NA |
| 770 | 13.13 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 869 | 13.16 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 874 | 13.16 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 897 | 13.17 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 898 | 13.17 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 15 | 18 |
| 899 | 13.17 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 18 |
| 903 | 13.17 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 925 | 13.18 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 946 | 13.18 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 7 | 11 |
| 972 | 13.19 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 15 | 3 |