Os06g0307900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1618 domain containing protein.
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Os06g0307900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1618 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70.57 | 0.395 | 6.24 | 0.459 | 0.707 | -0.488 | -0.0799 | -0.975 | 0.473 | 6.64 | 50 | 6492 | -- | -- |
| 71.45 | 0.394 | 6.21 | 0.528 | 0.651 | -0.846 | -9.8e-05 | -- | 0.467 | 6.43 | 49.94 | 5436 | -- | -- |
| 69.65 | 0.389 | 6.22 | 0.408 | 0.707 | -0.541 | -- | -0.927 | 0.55 | 6.7 | 49.01 | 8923 | -- | -- |
| 71.16 | 0.393 | 6.23 | 0.509 | 0.701 | -0.896 | -- | -- | 0.464 | 6.5 | 49.94 | 5440 | -- | -- |
| 95.6 | 0.455 | 6.22 | 0.377 | -- | -0.569 | -- | -0.841 | 0.579 | -- | 49 | 9212 | -- | -- |
| 79.94 | 0.419 | 6.21 | 0.241 | 0.71 | -- | -0.061 | -- | 0.521 | 6.74 | -- | -- | -- | -- |
| 79.95 | 0.419 | 6.21 | 0.24 | 0.71 | -- | -- | -- | 0.521 | 6.75 | -- | -- | -- | -- |
| 96.4 | 0.457 | 6.24 | 0.532 | -- | -0.996 | -- | -- | 0.475 | -- | 50 | 5129 | -- | -- |
| 75.63 | 0.405 | 6.23 | -- | 0.708 | -0.522 | -- | -- | 0.442 | 6.67 | 44.75 | 9898 | -- | -- |
| 106.28 | 0.482 | 6.23 | 0.256 | -- | -- | -- | -- | 0.535 | -- | -- | -- | -- | -- |
| 81.46 | 0.422 | 6.22 | -- | 0.713 | -- | -- | -- | 0.494 | 6.73 | -- | -- | -- | -- |
| 100.45 | 0.467 | 6.25 | -- | -- | -0.514 | -- | -- | 0.419 | -- | 46 | 15286 | -- | -- |
| 108 | 0.485 | 6.23 | -- | -- | -- | -- | -- | 0.506 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.45 | temperature | 30 | 43200 | < th | dose independent | rect. | 1 | 8 |
| 3 | 62.51 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 19 | 62.58 | temperature | 30 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 21 | 62.59 | temperature | 30 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 36 | 62.65 | temperature | 30 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 104 | 65.17 | radiation | 40 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 108 | 65.35 | radiation | 40 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 128 | 65.43 | radiation | 10 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 145 | 65.47 | radiation | 40 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 193 | 65.62 | radiation | 40 | 43200 | < th | dose dependent | rect. | 10 | 7 |
| 254 | 65.68 | radiation | 40 | 43200 | < th | dose dependent | sin | 20 | NA |
| 257 | 65.68 | radiation | 1 | 43200 | > th | dose dependent | rect. | 11 | 6 |
| 259 | 65.69 | radiation | 20 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 376 | 65.73 | radiation | 20 | 43200 | < th | dose independent | rect. | 10 | 6 |
| 386 | 65.74 | radiation | 40 | 43200 | > th | dose independent | sin | 16 | NA |
| 393 | 65.74 | radiation | 10 | 43200 | > th | dose dependent | sin | 17 | NA |
| 394 | 65.74 | radiation | 1 | 43200 | > th | dose dependent | sin | 19 | NA |
| 410 | 65.75 | radiation | 30 | 43200 | > th | dose independent | rect. | 9 | 23 |
| 411 | 65.75 | radiation | 30 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 513 | 65.77 | radiation | 30 | 43200 | > th | dose independent | no | NA | NA |
| 518 | 65.77 | radiation | 30 | 43200 | > th | dose independent | rect. | 7 | 10 |
| 800 | 65.81 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 942 | 65.84 | radiation | 40 | 43200 | < th | dose dependent | no | NA | NA |