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Os06g0306300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plant peroxidase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.92 (0.0583) R2 : 0.773
β1 : -4.75 (0.216) R2dD : 0.262 R2D : 0.278
β2 : 4.02 (0.138) R2dC : 0.41 R2C : 0.404
β3 : 2.51 (0.274) R2dE : 0.0693 R2E : -0.0639
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -9.3 (0.797) R2dD*E : 0.0993 R2D*E : 0.0701
γ1 : 0.37 (0.125) R2dN8 : 0.00505 R2N8 : 0.00744
σ : 1.08
deviance : 542.17
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C
peak time of C : 23.5
E
wheather : wind
threshold : 3.514
memory length : 3402
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.18e-05
open length of G : 0.317

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
536.39 1.09 8.88 -4.49 3.96 2.21 2.49 -8.44 0.331 23.4 3.286 3456 23.9 0.854
637.01 1.18 8.93 -4.74 3.89 1.97 1.84 -- -0.196 23.2 0.7076 1774 1.12 2.68
542.17 1.08 8.92 -4.75 4.02 2.51 -- -9.3 0.37 23.5 3.514 3402 5.18e-05 0.317
652.96 1.19 8.95 -4.84 3.83 2.62 -- -- -0.177 23.2 0.135 1755 1.2 2.62
1518.56 1.81 8.88 -4.73 -- 2.83 -- -10.1 0.373 -- 3.5 3358 0.0165 0.317
706.44 1.25 8.87 -4.9 3.98 -- 2.2 -- 0.159 23.5 -- -- -- --
727.3 1.26 8.87 -4.99 3.97 -- -- -- 0.149 23.5 -- -- -- --
1355.79 1.72 8.73 -4.76 -- 3.01 -- -- 0.418 -- -7.942 1849 19.2 5.38
1223.8 1.63 8.94 -- 4.15 4.28 -- -- -0.077 22.8 0.1938 1725 1.73 4.18
1718.96 1.94 8.78 -4.88 -- -- -- -- 0.193 -- -- -- -- --
1383.41 1.74 8.75 -- 3.92 -- -- -- 0.705 23.5 -- -- -- --
1183.15 1.6 8.68 -- -- 6.64 -- -- 0.492 -- -2.805 2178 14.3 6.92
2347.39 2.26 8.66 -- -- -- -- -- 0.735 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 564.21 radiation 30 4320 < th dose independent rect. 16 16
2 565.08 temperature 20 1440 < th dose independent rect. 23 2
3 565.60 temperature 20 1440 < th dose independent rect. 22 4
6 566.55 temperature 20 1440 > th dose independent rect. 23 2
9 566.79 wind 5 4320 < th dose independent rect. 24 1
13 567.21 temperature 20 1440 > th dose independent rect. 22 4
24 568.36 wind 5 4320 > th dose independent rect. 24 1
64 572.81 wind 1 14400 > th dose independent rect. 23 3
74 573.70 radiation 30 4320 < th dose independent rect. 7 1
84 574.54 radiation 30 4320 < th dose independent rect. 2 6
91 575.26 temperature 20 14400 < th dose independent rect. 21 1
96 575.66 temperature 20 14400 > th dose independent rect. 21 1
109 576.30 temperature 20 1440 > th dose independent rect. 3 1
111 576.44 wind 7 43200 < th dose independent rect. 17 1
119 576.72 temperature 20 1440 < th dose independent rect. 3 1
120 576.75 radiation 10 1440 < th dose independent rect. 12 18
136 577.47 wind 7 43200 > th dose dependent rect. 16 2
140 577.69 radiation 20 1440 < th dose independent rect. 11 21
143 577.76 wind 7 4320 < th dose independent rect. 18 2
147 578.12 wind 7 43200 > th dose independent rect. 17 1
148 578.25 radiation 10 1440 < th dose independent rect. 13 5
151 578.42 wind 9 43200 > th dose independent rect. 9 5
153 578.60 radiation 10 1440 < th dose independent sin 15 NA
160 578.95 wind 3 4320 > th dose dependent rect. 24 1
162 579.02 wind 7 4320 > th dose independent rect. 18 1
166 579.16 temperature 20 1440 > th dose independent sin 11 NA
186 579.42 wind 9 43200 > th dose dependent rect. 10 6
189 579.47 temperature 20 1440 < th dose independent sin 11 NA
204 579.77 wind 9 43200 > th dose independent rect. 8 8
210 580.11 wind 1 14400 < th dose independent rect. 22 4
225 580.41 wind 9 43200 < th dose independent rect. 9 5
239 580.76 radiation 10 1440 < th dose independent rect. 16 1
248 581.12 wind 9 43200 < th dose independent rect. 8 8
258 581.48 humidity 80 14400 > th dose dependent rect. 5 1
270 581.93 wind 9 43200 < th dose independent rect. 5 11
272 582.02 wind 9 43200 > th dose independent sin 0 NA
281 582.18 wind 9 43200 > th dose dependent rect. 10 9
282 582.21 wind 1 14400 < th dose independent rect. 24 2
338 583.06 radiation 20 1440 < th dose independent rect. 11 2
354 583.39 wind 1 14400 < th dose dependent rect. 21 5
389 583.90 wind 9 43200 < th dose independent sin 0 NA
450 584.87 wind 9 43200 > th dose independent rect. 15 2
477 585.22 wind 1 14400 < th dose dependent rect. 19 7
489 585.36 wind 9 43200 > th dose independent rect. 18 23
572 586.03 wind 7 43200 > th dose dependent rect. 7 10
575 586.06 wind 9 43200 > th dose independent rect. 11 23
580 586.10 wind 9 43200 > th dose independent rect. 13 23
584 586.13 wind 9 43200 > th dose independent rect. 13 21
594 586.21 wind 9 43200 > th dose independent rect. 8 23
599 586.29 wind 9 43200 > th dose independent no NA NA
604 586.32 wind 7 43200 > th dose dependent rect. 4 15
623 586.48 temperature 20 1440 > th dose independent rect. 5 1
628 586.52 radiation 20 4320 > th dose dependent rect. 7 1
633 586.58 humidity 70 43200 > th dose independent rect. 11 1
646 586.71 wind 9 43200 > th dose dependent rect. 10 20
660 586.87 wind 9 14400 < th dose independent rect. 16 21
663 586.93 wind 9 43200 < th dose independent rect. 18 23
669 586.98 radiation 1 43200 > th dose dependent rect. 18 12
684 587.12 humidity 50 14400 > th dose dependent rect. 5 1
692 587.18 wind 9 43200 > th dose independent rect. 15 23
697 587.25 temperature 20 1440 < th dose independent rect. 5 1
720 587.41 wind 9 43200 < th dose independent rect. 5 20
725 587.44 wind 7 43200 > th dose dependent sin 0 NA
785 587.74 wind 9 43200 < th dose independent rect. 13 23
811 587.94 wind 9 43200 < th dose independent rect. 13 21
817 587.97 wind 9 43200 > th dose dependent sin 19 NA
837 588.20 wind 9 43200 < th dose independent no NA NA
838 588.20 wind 9 43200 < th dose independent rect. 7 23
846 588.27 wind 9 43200 < th dose independent rect. 11 23
869 588.58 wind 1 43200 > th dose dependent rect. 22 1
876 588.63 wind 9 43200 > th dose dependent rect. 13 19
878 588.66 wind 9 43200 < th dose dependent rect. 22 1
885 588.72 radiation 1 43200 > th dose dependent rect. 4 2
909 588.90 wind 7 14400 > th dose dependent rect. 16 21
927 589.16 radiation 10 43200 < th dose independent rect. 17 15
935 589.24 wind 9 43200 < th dose independent rect. 15 2
938 589.25 wind 9 43200 < th dose independent rect. 15 23
981 589.77 humidity 80 14400 > th dose dependent rect. 2 5