Os06g0305200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-repetitive/WGA-negative nucleoporin family protein.
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Os06g0305200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-repetitive/WGA-negative nucleoporin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.89 | 0.248 | 10.3 | 1.67 | 0.485 | -0.694 | 0.155 | 2.12 | 0.393 | 16.3 | 16.24 | 1171 | -- | -- |
| 32.9 | 0.267 | 10.4 | 1.21 | 0.497 | -0.575 | -0.0332 | -- | 0.286 | 15.9 | 13.73 | 2676 | -- | -- |
| 27.95 | 0.246 | 10.3 | 1.66 | 0.486 | -0.696 | -- | 2.07 | 0.391 | 16.3 | 16.17 | 1163 | -- | -- |
| 31.7 | 0.262 | 10.4 | 1.22 | 0.488 | -0.706 | -- | -- | 0.259 | 16.1 | 14.4 | 1264 | -- | -- |
| 40.35 | 0.296 | 10.3 | 1.66 | -- | -0.816 | -- | 2 | 0.39 | -- | 16 | 1179 | -- | -- |
| 39.59 | 0.295 | 10.4 | 0.981 | 0.544 | -- | -0.0971 | -- | 0.141 | 15.8 | -- | -- | -- | -- |
| 39.62 | 0.295 | 10.4 | 0.979 | 0.544 | -- | -- | -- | 0.14 | 15.8 | -- | -- | -- | -- |
| 43.87 | 0.308 | 10.4 | 1.21 | -- | -0.846 | -- | -- | 0.277 | -- | 13.18 | 1194 | -- | -- |
| 64.23 | 0.373 | 10.4 | -- | 0.503 | -0.18 | -- | -- | 0.0663 | 15.8 | 8.634 | 1211 | -- | -- |
| 55.91 | 0.349 | 10.4 | 0.957 | -- | -- | -- | -- | 0.126 | -- | -- | -- | -- | -- |
| 64.89 | 0.377 | 10.4 | -- | 0.525 | -- | -- | -- | 0.031 | 15.8 | -- | -- | -- | -- |
| 76.61 | 0.409 | 10.4 | -- | -- | 0.367 | -- | -- | -0.0298 | -- | 21.69 | 1195 | -- | -- |
| 80.05 | 0.418 | 10.4 | -- | -- | -- | -- | -- | 0.0195 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.43 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 9 |
| 7 | 27.51 | radiation | 30 | 14400 | < th | dose dependent | rect. | 22 | 7 |
| 9 | 27.53 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 23 | 27.63 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 41 | 27.72 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 81 | 27.82 | temperature | 20 | 1440 | > th | dose dependent | sin | 18 | NA |
| 160 | 27.94 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 11 |
| 170 | 27.95 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 15 |
| 210 | 28.00 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 8 |
| 254 | 28.05 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 6 |
| 284 | 28.08 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 4 |
| 330 | 28.13 | temperature | 30 | 1440 | < th | dose dependent | sin | 17 | NA |
| 379 | 28.18 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 21 |
| 435 | 28.25 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 1 |
| 456 | 28.26 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 22 |
| 480 | 28.28 | radiation | 20 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 502 | 28.30 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 3 |
| 609 | 28.39 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 20 |
| 709 | 28.44 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 716 | 28.45 | temperature | 15 | 1440 | > th | dose dependent | no | NA | NA |
| 765 | 28.46 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 876 | 28.51 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 917 | 28.53 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 23 |