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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0304300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.99 (0.0237) R2 : 0.0111
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.113 (0.05) R2dN8 : 0.0143 R2N8 : 0.0111
σ : 0.447
deviance : 91.67
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
87.64 0.44 3 -0.154 0.124 -0.335 0.151 1.44 0.0914 12 1 16 -- --
89.38 0.44 2.99 -0.108 0.123 -0.231 0.254 -- 0.11 11.7 1.085 16 -- --
87.74 0.436 3 -0.151 0.123 -0.339 -- 1.49 0.0919 12.2 1.021 16 -- --
89.65 0.441 2.99 -0.0951 0.123 -0.226 -- -- 0.106 11.7 1.1 16 -- --
88.66 0.439 3.01 -0.149 -- -0.3 -- 1.48 0.0897 -- 1.036 16 -- --
90.57 0.446 2.99 -0.0708 0.116 -- 0.223 -- 0.105 9.96 -- -- -- --
90.76 0.446 2.99 -0.0625 0.117 -- -- -- 0.106 9.63 -- -- -- --
90.56 0.443 2.99 -0.0899 -- -0.197 -- -- 0.107 -- 1.1 16 -- --
89.86 0.442 2.99 -- 0.122 -0.213 -- -- 0.117 11.6 1 16 -- --
91.56 0.447 2.99 -0.0635 -- -- -- -- 0.106 -- -- -- -- --
90.86 0.446 2.99 -- 0.117 -- -- -- 0.113 9.67 -- -- -- --
90.77 0.444 2.99 -- -- -0.186 -- -- 0.116 -- 1.033 16 -- --
91.67 0.447 2.99 -- -- -- -- -- 0.113 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 80.68 atmosphere 1005.0 10 > th dose independent rect. 2 1
2 80.75 wind 3.0 10 < th dose independent rect. 2 1
3 80.77 temperature 30.0 10 < th dose dependent rect. 2 1
4 80.78 atmosphere 1005.0 10 > th dose dependent rect. 2 1
7 80.83 atmosphere 1005.0 90 > th dose dependent rect. 1 2
11 80.89 wind 9.0 10 < th dose dependent rect. 2 1
12 80.90 wind 1.0 30 > th dose independent rect. 2 1
14 80.90 temperature 10.0 10 > th dose independent rect. 2 1
16 80.90 temperature 30.0 10 < th dose independent rect. 2 1
17 80.90 humidity 50.0 10 > th dose independent rect. 2 1
20 80.90 atmosphere 995.0 10 > th dose independent rect. 2 1
21 80.90 atmosphere 1010.0 10 < th dose independent rect. 2 1
23 80.90 radiation 1.0 10 < th dose independent rect. 2 1
28 80.90 precipitation 0.1 10 < th dose independent rect. 2 1
29 80.90 temperature 10.0 10 > th dose independent rect. 3 23
31 80.90 radiation 1.0 10 < th dose dependent rect. 2 1
36 80.90 precipitation 0.1 10 < th dose dependent rect. 2 1
74 81.01 temperature 10.0 10 > th dose dependent rect. 2 1
76 81.03 humidity 50.0 10 > th dose dependent rect. 2 1
77 81.03 atmosphere 1015.0 30 < th dose dependent rect. 2 1
90 81.15 precipitation 0.1 30 < th dose independent rect. 3 23
93 81.15 precipitation 0.1 30 < th dose dependent rect. 3 23
101 81.19 atmosphere 995.0 10 > th dose independent rect. 3 23
117 81.50 radiation 1.0 14400 < th dose dependent rect. 3 1
120 81.53 wind 9.0 1440 < th dose independent rect. 3 1
121 81.53 temperature 10.0 1440 > th dose independent rect. 3 1
124 81.53 temperature 30.0 1440 < th dose independent rect. 3 1
128 81.53 humidity 50.0 1440 > th dose independent rect. 3 1
137 81.53 atmosphere 995.0 1440 > th dose independent rect. 3 1
138 81.53 radiation 1.0 1440 < th dose independent rect. 3 1
158 81.53 temperature 10.0 1440 > th dose independent rect. 4 23
184 82.00 wind 9.0 30 < th dose independent rect. 3 23
191 82.40 atmosphere 1015.0 30 < th dose independent rect. 3 23
201 83.52 humidity 50.0 30 > th dose independent rect. 3 23
218 84.19 radiation 40.0 30 < th dose dependent rect. 3 23
219 84.21 humidity 90.0 90 < th dose independent rect. 1 2
249 84.91 temperature 10.0 30 > th dose dependent rect. 3 23
251 84.96 radiation 20.0 30 < th dose independent rect. 3 23
253 84.97 temperature 25.0 270 > th dose independent rect. 23 4
270 85.20 wind 1.0 10 < th dose independent rect. 7 20
301 85.34 wind 1.0 10 < th dose independent rect. 9 18
310 85.41 temperature 30.0 30 < th dose independent rect. 3 23
410 86.07 humidity 90.0 90 < th dose independent rect. 1 4
412 86.09 wind 9.0 90 < th dose dependent rect. 14 13
421 86.15 wind 3.0 30 < th dose dependent rect. 22 5
426 86.18 radiation 20.0 30 < th dose independent rect. 3 10
484 86.39 wind 1.0 30 > th dose dependent rect. 2 1
501 86.46 wind 3.0 30 < th dose dependent rect. 17 10
596 86.59 wind 3.0 30 < th dose dependent rect. 11 16
602 86.61 wind 7.0 90 < th dose independent rect. 14 13
648 86.71 atmosphere 1015.0 1440 < th dose independent rect. 3 1
684 86.82 radiation 40.0 30 < th dose dependent rect. 3 9
721 86.99 radiation 20.0 30 < th dose independent rect. 3 7
738 87.04 temperature 10.0 720 > th dose dependent rect. 3 1
750 87.06 radiation 40.0 90 < th dose dependent rect. 14 13
751 87.06 radiation 30.0 720 > th dose dependent rect. 15 18
752 87.07 wind 3.0 14400 > th dose independent rect. 23 1
775 87.12 humidity 50.0 30 > th dose dependent rect. 3 23
792 87.14 wind 9.0 90 < th dose dependent rect. 11 16
811 87.19 precipitation 0.1 270 > th dose independent rect. 8 1
814 87.19 precipitation 0.1 270 > th dose dependent rect. 8 1
830 87.22 humidity 90.0 720 > th dose independent rect. 10 3
845 87.22 temperature 10.0 270 > th dose dependent rect. 3 19
846 87.23 humidity 90.0 270 > th dose independent rect. 10 1
861 87.23 humidity 50.0 90 > th dose independent rect. 14 13
863 87.23 humidity 90.0 270 > th dose dependent rect. 10 1
875 87.23 wind 9.0 90 < th dose dependent rect. 7 20
879 87.24 temperature 30.0 10 < th dose independent rect. 11 16
880 87.24 wind 1.0 14400 > th dose dependent rect. 22 2
890 87.25 wind 1.0 90 < th dose dependent rect. 11 1
891 87.25 temperature 25.0 270 < th dose dependent rect. 10 1
923 87.29 wind 1.0 30 > th dose independent rect. 3 23
939 87.31 wind 3.0 14400 < th dose independent rect. 23 1
944 87.31 humidity 50.0 30 > th dose dependent rect. 3 10
948 87.32 wind 9.0 14400 < th dose dependent rect. 22 2
964 87.34 radiation 30.0 720 < th dose independent rect. 15 18
982 87.36 temperature 10.0 90 > th dose independent rect. 3 11
983 87.36 atmosphere 995.0 90 > th dose independent rect. 3 11
984 87.36 atmosphere 1015.0 90 < th dose independent rect. 3 11
985 87.36 temperature 10.0 90 > th dose independent rect. 14 13
986 87.36 radiation 30.0 720 > th dose independent rect. 15 18
991 87.37 radiation 40.0 90 < th dose independent rect. 14 13
995 87.37 wind 3.0 30 < th dose dependent rect. 7 20