Os06g0303700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os06g0303700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.46 | 0.237 | 9.65 | 0.596 | 0.474 | 0.692 | -0.0145 | -0.494 | 0.0962 | 15.2 | 72.05 | 1386 | -- | -- |
| 25.76 | 0.236 | 9.65 | 0.568 | 0.469 | 0.663 | -0.0387 | -- | 0.0912 | 15.2 | 71 | 1376 | -- | -- |
| 25.46 | 0.235 | 9.65 | 0.595 | 0.474 | 0.692 | -- | -0.491 | 0.0959 | 15.2 | 72.12 | 1384 | -- | -- |
| 25.73 | 0.236 | 9.65 | 0.542 | 0.469 | 0.677 | -- | -- | 0.0847 | 15.2 | 72.83 | 1383 | -- | -- |
| 34.91 | 0.275 | 9.65 | 0.607 | -- | 0.856 | -- | -0.395 | 0.0995 | -- | 68.6 | 1210 | -- | -- |
| 32 | 0.265 | 9.67 | 0.564 | 0.508 | -- | 0.0296 | -- | 0.0133 | 15.3 | -- | -- | -- | -- |
| 32 | 0.265 | 9.67 | 0.565 | 0.508 | -- | -- | -- | 0.0134 | 15.3 | -- | -- | -- | -- |
| 35.1 | 0.276 | 9.65 | 0.542 | -- | 0.808 | -- | -- | 0.0902 | -- | 68.22 | 1202 | -- | -- |
| 32.65 | 0.266 | 9.65 | -- | 0.524 | 0.708 | -- | -- | 0.0665 | 15.1 | 81.99 | 1473 | -- | -- |
| 46.64 | 0.319 | 9.67 | 0.543 | -- | -- | -- | -- | 7.63e-05 | -- | -- | -- | -- | -- |
| 40.41 | 0.297 | 9.68 | -- | 0.497 | -- | -- | -- | -0.0495 | 15.3 | -- | -- | -- | -- |
| 42.45 | 0.303 | 9.65 | -- | -- | 0.893 | -- | -- | 0.0318 | -- | 74.84 | 1223 | -- | -- |
| 54.43 | 0.344 | 9.68 | -- | -- | -- | -- | -- | -0.0602 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.93 | humidity | 90 | 1440 | > th | dose dependent | rect. | 8 | 16 |
| 3 | 25.11 | humidity | 90 | 720 | > th | dose dependent | rect. | 7 | 18 |
| 10 | 25.24 | humidity | 90 | 1440 | > th | dose dependent | sin | 20 | NA |
| 11 | 25.25 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 15 | 25.29 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 21 |
| 54 | 25.49 | humidity | 90 | 1440 | > th | dose independent | rect. | 9 | 15 |
| 78 | 25.56 | humidity | 70 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 85 | 25.57 | humidity | 70 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 92 | 25.58 | humidity | 70 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 93 | 25.58 | humidity | 70 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 95 | 25.59 | humidity | 70 | 1440 | > th | dose dependent | no | NA | NA |
| 116 | 25.61 | humidity | 70 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 161 | 25.67 | humidity | 70 | 1440 | > th | dose dependent | rect. | 14 | 23 |
| 216 | 25.73 | humidity | 90 | 1440 | > th | dose independent | sin | 21 | NA |
| 230 | 25.74 | humidity | 70 | 1440 | > th | dose dependent | sin | 17 | NA |
| 260 | 25.76 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 22 |
| 289 | 25.79 | humidity | 50 | 1440 | > th | dose dependent | sin | 14 | NA |
| 379 | 25.84 | humidity | 90 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 435 | 25.89 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 22 |
| 599 | 26.04 | humidity | 90 | 1440 | < th | dose independent | sin | 21 | NA |
| 652 | 26.09 | humidity | 80 | 1440 | > th | dose independent | rect. | 23 | 22 |
| 660 | 26.10 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 3 |
| 717 | 26.14 | humidity | 80 | 1440 | > th | dose independent | rect. | 20 | 23 |
| 724 | 26.14 | humidity | 60 | 720 | > th | dose dependent | rect. | 18 | 9 |
| 789 | 26.18 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 793 | 26.18 | humidity | 80 | 1440 | > th | dose independent | rect. | 2 | 23 |
| 807 | 26.19 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 22 |
| 808 | 26.19 | humidity | 80 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 832 | 26.20 | humidity | 80 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 876 | 26.22 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 17 |
| 959 | 26.26 | humidity | 80 | 1440 | > th | dose independent | rect. | 14 | 23 |