Os06g0303600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os06g0303600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 83.7 | 0.43 | 10.7 | -1.5 | 1.62 | -0.461 | 0.55 | 1.78 | -0.508 | 6.69 | 90.77 | 100 | -- | -- |
| 89.45 | 0.44 | 10.8 | -1.45 | 1.64 | -0.414 | 1.1 | -- | -0.494 | 6.58 | 91 | 95 | -- | -- |
| 84.16 | 0.427 | 10.7 | -1.47 | 1.61 | -0.477 | -- | 2.2 | -0.502 | 6.73 | 91.47 | 145 | -- | -- |
| 90.08 | 0.442 | 10.8 | -1.48 | 1.63 | -0.873 | -- | -- | -0.507 | 6.84 | 94.84 | 322 | -- | -- |
| 150.6 | 0.572 | 10.8 | -1.46 | -- | 1.38 | -- | 1.84 | -0.45 | -- | 65.36 | 503 | -- | -- |
| 93.02 | 0.452 | 10.7 | -1.48 | 1.51 | -- | 0.822 | -- | -0.413 | 6.88 | -- | -- | -- | -- |
| 94.74 | 0.456 | 10.7 | -1.46 | 1.51 | -- | -- | -- | -0.415 | 6.93 | -- | -- | -- | -- |
| 148.07 | 0.567 | 10.8 | -1.47 | -- | 1.43 | -- | -- | -0.303 | -- | 64.17 | 510 | -- | -- |
| 143.73 | 0.558 | 10.7 | -- | 1.75 | -0.694 | -- | -- | -0.366 | 6.87 | 90.33 | 406 | -- | -- |
| 214.31 | 0.684 | 10.8 | -1.43 | -- | -- | -- | -- | -0.387 | -- | -- | -- | -- | -- |
| 150.94 | 0.575 | 10.7 | -- | 1.49 | -- | -- | -- | -0.252 | 6.99 | -- | -- | -- | -- |
| 203.02 | 0.664 | 10.7 | -- | -- | 1.48 | -- | -- | -0.173 | -- | 60.34 | 536 | -- | -- |
| 268.15 | 0.764 | 10.7 | -- | -- | -- | -- | -- | -0.228 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 78.08 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 78.08 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 3 | 78.20 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 4 | 78.24 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 6 | 78.54 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 7 | 78.54 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 8 | 78.75 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 9 | 78.88 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 10 | 78.88 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 5 |
| 60 | 81.29 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 61 | 81.29 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 70 | 81.51 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 23 | 16 |
| 92 | 81.80 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 22 | 18 |
| 98 | 81.91 | humidity | 70.0 | 10 | > th | dose dependent | sin | 5 | NA |
| 123 | 82.26 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 128 | 82.28 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 132 | 82.29 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 20 | 20 |
| 161 | 82.49 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 190 | 82.69 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 20 | 12 |
| 251 | 83.06 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 253 | 83.06 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 255 | 83.06 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 306 | 83.06 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 308 | 83.06 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 310 | 83.06 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 371 | 83.15 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 22 | 10 |
| 373 | 83.17 | temperature | 10.0 | 10 | > th | dose dependent | sin | 5 | NA |
| 381 | 83.22 | temperature | 30.0 | 10 | < th | dose dependent | sin | 6 | NA |
| 384 | 83.24 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 409 | 83.35 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 420 | 83.39 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 20 | 7 |
| 428 | 83.40 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 458 | 83.48 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 12 |
| 462 | 83.49 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 14 |
| 470 | 83.50 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 20 |
| 506 | 83.57 | humidity | 90.0 | 90 | > th | dose independent | rect. | 23 | 15 |
| 535 | 83.60 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 7 | 22 |
| 580 | 83.69 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 591 | 83.73 | humidity | 90.0 | 10 | < th | dose independent | sin | 3 | NA |
| 596 | 83.75 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 17 | 21 |
| 602 | 83.77 | temperature | 25.0 | 10 | < th | dose independent | sin | 6 | NA |
| 605 | 83.77 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 18 | 22 |
| 610 | 83.78 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 24 | 19 |
| 633 | 83.82 | humidity | 90.0 | 90 | > th | dose independent | rect. | 23 | 13 |
| 653 | 83.86 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 10 | 22 |
| 655 | 83.87 | humidity | 90.0 | 90 | > th | dose dependent | no | NA | NA |
| 661 | 83.87 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 663 | 83.88 | humidity | 80.0 | 10 | > th | dose dependent | no | NA | NA |
| 668 | 83.88 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 676 | 83.90 | temperature | 25.0 | 10 | > th | dose independent | sin | 5 | NA |
| 677 | 83.90 | wind | 7.0 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 697 | 83.92 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 22 | 8 |
| 724 | 83.95 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 730 | 83.96 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 731 | 83.96 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 735 | 83.97 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 746 | 83.98 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 747 | 83.98 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 748 | 83.99 | precipitation | 0.1 | 270 | < th | dose independent | sin | 8 | NA |
| 751 | 83.99 | precipitation | 0.1 | 270 | < th | dose dependent | sin | 8 | NA |
| 775 | 84.03 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 802 | 84.06 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 819 | 84.11 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 24 | 8 |
| 841 | 84.14 | humidity | 90.0 | 10 | > th | dose independent | sin | 4 | NA |
| 858 | 84.16 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 24 | 8 |
| 871 | 84.18 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 877 | 84.20 | wind | 7.0 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 881 | 84.21 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 894 | 84.24 | temperature | 25.0 | 10 | < th | dose independent | rect. | 22 | 20 |
| 911 | 84.26 | humidity | 90.0 | 10 | < th | dose independent | rect. | 3 | 9 |
| 926 | 84.26 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 11 | 21 |
| 967 | 84.32 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 977 | 84.33 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 3 | 23 |