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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0302300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.86 (0.0167) R2 : 0.00242
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0369 (0.0351) R2dN8 : 0.00313 R2N8 : 0.00242
σ : 0.314
deviance : 45.31
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
43 0.308 2.85 0.0766 0.0662 -0.00253 -0.191 2.06 0.0474 5.68 0.1544 10 -- --
43.65 0.31 2.86 0.0623 0.0605 0.366 -0.154 -- 0.0512 6.28 9.074e-06 8 -- --
43.05 0.306 2.85 0.0765 0.0693 0.00111 -- 2.06 0.0485 7.05 0.1163 9 -- --
43.7 0.31 2.86 0.0608 0.0611 0.369 -- -- 0.052 7.17 8.649e-06 8 -- --
43.3 0.306 2.85 0.0766 -- 0.0442 -- 1.96 0.051 -- 0.03688 9 -- --
44.8 0.314 2.86 0.0838 0.0743 -- -0.132 -- 0.0442 5.98 -- -- -- --
44.84 0.314 2.86 0.0826 0.0736 -- -- -- 0.0447 5.96 -- -- -- --
43.9 0.31 2.86 0.062 -- 0.376 -- -- 0.0534 -- 0.1121 8 -- --
43.8 0.31 2.86 -- 0.0615 0.38 -- -- 0.0456 7.15 0.02814 8 -- --
45.12 0.314 2.86 0.0848 -- -- -- -- 0.0464 -- -- -- -- --
45.02 0.314 2.86 -- 0.0749 -- -- -- 0.0355 5.91 -- -- -- --
44 0.31 2.86 -- -- 0.388 -- -- 0.0467 -- 0.02814 8 -- --
45.31 0.314 2.86 -- -- -- -- -- 0.0369 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 40.26 radiation 10.0 10 > th dose independent rect. 6 1
27 40.26 radiation 10.0 10 > th dose dependent rect. 6 1
57 41.85 wind 3.0 30 < th dose dependent rect. 6 1
58 41.86 temperature 30.0 90 > th dose dependent rect. 10 2
59 41.93 atmosphere 1005.0 30 > th dose dependent rect. 6 1
77 42.08 temperature 30.0 10 > th dose dependent rect. 11 1
82 42.18 humidity 80.0 30 > th dose dependent rect. 6 1
120 42.37 temperature 30.0 30 < th dose dependent rect. 6 1
176 42.64 radiation 10.0 10 < th dose dependent rect. 6 1
179 42.70 wind 3.0 30 < th dose independent rect. 6 1
181 42.73 wind 3.0 10 < th dose dependent rect. 24 1
186 42.78 temperature 30.0 90 > th dose dependent sin 8 NA
191 42.82 atmosphere 1010.0 10 < th dose independent rect. 1 10
192 42.82 temperature 30.0 10 > th dose dependent sin 7 NA
195 42.88 wind 1.0 10 < th dose independent rect. 23 1
206 42.90 atmosphere 1005.0 10 > th dose independent rect. 24 1
207 42.92 temperature 20.0 30 > th dose independent rect. 6 1
212 42.93 temperature 10.0 30 > th dose independent rect. 6 1
214 42.93 temperature 30.0 30 < th dose independent rect. 6 1
215 42.93 humidity 50.0 30 > th dose independent rect. 6 1
219 42.93 atmosphere 995.0 30 > th dose independent rect. 6 1
220 42.93 atmosphere 1015.0 30 < th dose independent rect. 6 1
221 42.93 radiation 20.0 30 < th dose independent rect. 6 1
224 42.93 precipitation 0.1 30 < th dose independent rect. 6 1
225 42.93 temperature 10.0 30 > th dose independent rect. 7 23
227 42.93 precipitation 0.1 30 < th dose dependent rect. 6 1
228 42.94 wind 1.0 30 > th dose independent rect. 6 1
229 42.94 wind 9.0 1440 < th dose independent rect. 7 1
230 42.94 temperature 10.0 1440 > th dose independent rect. 7 1
234 42.94 temperature 30.0 1440 < th dose independent rect. 7 1
238 42.94 humidity 50.0 1440 > th dose independent rect. 7 1
245 42.94 atmosphere 995.0 1440 > th dose independent rect. 7 1
246 42.94 atmosphere 1015.0 1440 < th dose independent rect. 7 1
247 42.94 atmosphere 1010.0 10 < th dose independent rect. 24 1
249 42.94 temperature 10.0 1440 > th dose independent rect. 8 23
252 42.95 humidity 90.0 30 < th dose independent rect. 6 1
263 42.98 wind 1.0 10 < th dose dependent rect. 11 14
265 42.99 temperature 30.0 90 > th dose independent rect. 10 2
266 42.99 humidity 80.0 30 > th dose dependent rect. 24 1
299 43.03 temperature 15.0 10 > th dose independent rect. 24 1
302 43.05 wind 1.0 10 < th dose independent rect. 11 14
326 43.06 wind 1.0 10 < th dose dependent sin 14 NA
342 43.09 temperature 10.0 30 > th dose dependent rect. 6 1
347 43.10 wind 1.0 10 < th dose independent rect. 15 10
357 43.10 wind 1.0 10 < th dose dependent rect. 23 6
376 43.12 atmosphere 1010.0 10 < th dose independent rect. 1 23
378 43.12 atmosphere 995.0 10 > th dose dependent rect. 24 1
394 43.13 temperature 30.0 30 < th dose dependent rect. 24 1
395 43.14 humidity 80.0 10 > th dose independent rect. 24 1
419 43.15 wind 5.0 10 < th dose independent rect. 24 1
437 43.16 atmosphere 1010.0 10 < th dose independent sin 7 NA
441 43.16 temperature 30.0 10 < th dose independent rect. 24 1
442 43.16 humidity 50.0 10 > th dose independent rect. 24 1
447 43.16 radiation 1.0 10 < th dose independent rect. 24 1
452 43.16 precipitation 0.1 10 < th dose independent rect. 24 1
454 43.16 wind 9.0 30 < th dose independent rect. 7 23
455 43.16 temperature 10.0 10 > th dose independent rect. 1 23
457 43.16 radiation 1.0 10 < th dose dependent rect. 24 1
462 43.16 precipitation 0.1 10 < th dose dependent rect. 24 1
474 43.17 wind 1.0 10 < th dose dependent rect. 11 18
529 43.18 wind 1.0 10 < th dose dependent rect. 4 21
530 43.19 temperature 10.0 10 > th dose dependent rect. 24 1
533 43.19 atmosphere 1005.0 30 > th dose dependent rect. 24 7
539 43.19 wind 1.0 10 < th dose dependent rect. 2 23
560 43.21 wind 1.0 10 < th dose dependent rect. 23 13
570 43.22 temperature 25.0 10 > th dose independent rect. 24 1
638 43.24 wind 9.0 10 < th dose independent rect. 1 23
648 43.24 wind 1.0 10 < th dose dependent rect. 15 21
757 43.28 temperature 25.0 10 > th dose independent rect. 24 7
758 43.28 atmosphere 1010.0 10 < th dose independent rect. 12 23
760 43.28 wind 1.0 10 < th dose dependent no NA NA
763 43.28 atmosphere 1015.0 30 < th dose dependent rect. 24 1
825 43.30 radiation 40.0 43200 < th dose dependent rect. 1 1
835 43.31 precipitation 0.1 1440 < th dose independent rect. 9 1
837 43.31 precipitation 0.1 1440 < th dose dependent rect. 9 1
855 43.32 temperature 30.0 10 > th dose independent rect. 11 1
868 43.35 wind 7.0 1440 < th dose independent rect. 1 1
872 43.35 temperature 10.0 1440 > th dose independent rect. 1 1
876 43.35 temperature 30.0 1440 < th dose independent rect. 1 1
880 43.35 humidity 50.0 1440 > th dose independent rect. 1 1
890 43.35 atmosphere 995.0 1440 > th dose independent rect. 1 1
891 43.35 radiation 1.0 1440 < th dose independent rect. 1 1
914 43.35 temperature 10.0 1440 > th dose independent rect. 2 23
918 43.35 radiation 1.0 1440 < th dose dependent rect. 1 1
939 43.37 humidity 90.0 30 < th dose independent rect. 24 1
981 43.39 atmosphere 1010.0 10 < th dose independent rect. 20 15
1000 43.40 humidity 90.0 30 < th dose dependent rect. 24 1