Os06g0301500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0301500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.05 | 0.399 | 12.6 | -0.629 | 2.69 | 1.41 | 0.595 | -1.87 | 0.0307 | 15.4 | 21.51 | 338 | -- | -- |
| 73.59 | 0.4 | 12.6 | -0.295 | 2.75 | 1.31 | 0.255 | -- | 0.121 | 15.4 | 19.5 | 364 | -- | -- |
| 72.93 | 0.398 | 12.6 | -0.544 | 2.71 | 1.38 | -- | -1.41 | 0.0605 | 15.4 | 21.56 | 351 | -- | -- |
| 73.79 | 0.4 | 12.6 | -0.292 | 2.75 | 1.32 | -- | -- | 0.12 | 15.4 | 19.6 | 364 | -- | -- |
| 314.26 | 0.826 | 12.6 | -1.09 | -- | 3.87 | -- | -2.69 | -0.197 | -- | 24.19 | 174 | -- | -- |
| 102.47 | 0.475 | 12.6 | 0.0129 | 3.18 | -- | 0.612 | -- | 0.35 | 15.7 | -- | -- | -- | -- |
| 103.59 | 0.477 | 12.6 | 0.0221 | 3.19 | -- | -- | -- | 0.353 | 15.7 | -- | -- | -- | -- |
| 322.15 | 0.836 | 12.6 | -0.673 | -- | 3.56 | -- | -- | -0.0799 | -- | 24.2 | 160 | -- | -- |
| 75.75 | 0.405 | 12.6 | -- | 2.77 | 1.21 | -- | -- | 0.164 | 15.4 | 20.22 | 357 | -- | -- |
| 664.73 | 1.2 | 12.6 | -0.11 | -- | -- | -- | -- | 0.268 | -- | -- | -- | -- | -- |
| 103.6 | 0.476 | 12.6 | -- | 3.19 | -- | -- | -- | 0.351 | 15.7 | -- | -- | -- | -- |
| 333.83 | 0.851 | 12.6 | -- | -- | 3.46 | -- | -- | 0.003 | -- | 24.2 | 159 | -- | -- |
| 665.05 | 1.2 | 12.6 | -- | -- | -- | -- | -- | 0.281 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.80 | temperature | 10 | 270 | > th | dose dependent | rect. | 13 | 12 |
| 2 | 67.02 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 21 |
| 4 | 67.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 13 |
| 5 | 67.14 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 11 |
| 20 | 68.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 20 |
| 26 | 69.28 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 21 |
| 31 | 69.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 71 | 70.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 19 |
| 82 | 70.94 | temperature | 20 | 270 | > th | dose dependent | sin | 19 | NA |
| 96 | 71.18 | temperature | 10 | 270 | > th | dose dependent | sin | 19 | NA |
| 118 | 71.53 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 22 |
| 154 | 71.98 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 18 |
| 165 | 72.16 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 13 |
| 215 | 72.67 | temperature | 30 | 270 | < th | dose dependent | sin | 19 | NA |
| 221 | 72.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 6 |
| 235 | 72.93 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 268 | 73.32 | temperature | 20 | 720 | > th | dose dependent | sin | 2 | NA |
| 277 | 73.42 | temperature | 10 | 720 | > th | dose dependent | sin | 1 | NA |
| 293 | 73.57 | temperature | 10 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 358 | 74.13 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 20 |
| 387 | 74.38 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 4 |
| 545 | 75.47 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 13 |
| 566 | 75.59 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 18 |
| 578 | 75.66 | radiation | 1 | 270 | < th | dose independent | rect. | 16 | 13 |
| 593 | 75.70 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 11 |
| 661 | 76.03 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 671 | 76.08 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 2 |
| 702 | 76.23 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 12 |
| 708 | 76.25 | temperature | 30 | 720 | < th | dose independent | rect. | 2 | 10 |
| 922 | 76.79 | radiation | 1 | 270 | < th | dose dependent | rect. | 16 | 13 |
| 935 | 76.82 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 20 |
| 942 | 76.83 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 13 |
| 982 | 76.93 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 14 |