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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0301400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.16 (0.0178) R2 : 0.000368
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0154 (0.0376) R2dN8 : 0.000475 R2N8 : 0.000368
σ : 0.336
deviance : 51.8
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
48.72 0.328 3.2 0.196 0.134 -0.332 0.296 -0.879 -0.12 8.7 79.27 5353 -- --
49.69 0.328 3.19 0.0568 0.129 -0.296 0.242 -- -0.135 8.19 76.19 5315 -- --
48.97 0.326 3.2 0.187 0.134 -0.32 -- -0.781 -0.121 8.2 78.15 5370 -- --
49.63 0.328 3.18 0.0731 0.137 -0.31 -- -- -0.124 7.86 76.32 6696 -- --
49.67 0.328 3.19 0.164 -- -0.267 -- -0.697 -0.0991 -- 70.45 5752 -- --
51.03 0.335 3.16 0.0233 0.111 -- 0.172 -- -0.0135 7.74 -- -- -- --
51.1 0.335 3.16 0.0271 0.113 -- -- -- -0.0141 7.21 -- -- -- --
50.39 0.331 3.19 0.0722 -- -0.275 -- -- -0.114 -- 73 7185 -- --
49.77 0.329 3.18 -- 0.136 -0.29 -- -- -0.128 7.77 74.65 6687 -- --
51.77 0.336 3.16 0.0291 -- -- -- -- -0.0122 -- -- -- -- --
51.12 0.334 3.16 -- 0.113 -- -- -- -0.0171 7.19 -- -- -- --
50.52 0.331 3.19 -- -- -0.26 -- -- -0.116 -- 73 7186 -- --
51.8 0.336 3.16 -- -- -- -- -- -0.0154 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 44.05 wind 1.0 30 < th dose dependent rect. 23 1
15 44.76 wind 1.0 270 < th dose dependent rect. 21 2
18 44.95 wind 1.0 270 < th dose independent rect. 21 2
20 45.46 wind 1.0 270 < th dose dependent rect. 15 8
34 46.29 wind 1.0 30 < th dose dependent rect. 11 13
74 47.75 wind 1.0 10 < th dose dependent rect. 1 2
104 48.28 temperature 20.0 10 > th dose dependent rect. 23 1
116 48.45 wind 1.0 10 < th dose independent rect. 1 2
119 48.49 wind 1.0 30 < th dose independent rect. 23 1
137 48.60 wind 7.0 14400 < th dose independent rect. 9 1
157 48.68 humidity 80.0 14400 < th dose dependent rect. 2 7
170 48.78 wind 7.0 14400 > th dose independent rect. 9 1
178 48.83 humidity 80.0 14400 < th dose dependent rect. 22 12
193 48.89 wind 7.0 14400 > th dose dependent rect. 9 1
197 48.92 temperature 25.0 30 > th dose dependent rect. 6 1
201 48.93 temperature 25.0 720 < th dose independent rect. 3 1
207 48.94 wind 9.0 720 < th dose independent rect. 19 23
223 48.99 humidity 80.0 14400 < th dose dependent rect. 8 1
227 49.00 temperature 15.0 720 > th dose independent rect. 19 23
236 49.03 wind 5.0 720 < th dose independent rect. 6 1
239 49.03 temperature 10.0 30 > th dose dependent rect. 3 3
242 49.04 radiation 10.0 30 < th dose independent rect. 6 1
244 49.05 humidity 70.0 14400 > th dose independent rect. 8 1
245 49.05 atmosphere 1010.0 30 < th dose independent rect. 6 1
246 49.05 wind 1.0 14400 < th dose independent rect. 4 3
247 49.05 atmosphere 995.0 10 > th dose independent rect. 18 12
253 49.06 wind 9.0 10 < th dose independent rect. 6 12
254 49.06 precipitation 0.1 30 < th dose independent rect. 6 12
255 49.06 wind 1.0 30 > th dose dependent rect. 6 1
257 49.06 precipitation 0.1 30 < th dose dependent rect. 6 12
258 49.07 wind 1.0 14400 > th dose independent rect. 4 1
259 49.07 radiation 1.0 720 > th dose independent rect. 6 1
260 49.07 humidity 70.0 14400 < th dose independent rect. 8 2
261 49.07 wind 9.0 10 < th dose independent rect. 18 12
262 49.08 wind 1.0 14400 > th dose independent rect. 4 3
268 49.08 temperature 10.0 10 > th dose independent rect. 6 12
270 49.08 temperature 10.0 10 > th dose independent rect. 18 12
271 49.08 humidity 50.0 10 > th dose independent rect. 18 12
273 49.08 atmosphere 1015.0 10 < th dose independent rect. 6 12
274 49.08 radiation 10.0 10 < th dose independent rect. 18 12
300 49.09 humidity 90.0 30 < th dose dependent rect. 6 1
304 49.10 temperature 20.0 10 > th dose independent rect. 24 6
315 49.11 radiation 10.0 720 < th dose independent rect. 18 1
317 49.11 temperature 30.0 1440 > th dose independent rect. 18 22
319 49.11 wind 3.0 90 < th dose dependent rect. 6 18
322 49.12 wind 9.0 720 < th dose independent rect. 18 1
323 49.12 temperature 10.0 720 > th dose independent rect. 6 1
324 49.12 temperature 10.0 720 > th dose independent rect. 18 1
325 49.12 temperature 30.0 720 < th dose independent rect. 6 1
326 49.12 humidity 50.0 720 > th dose independent rect. 6 1
328 49.12 humidity 50.0 720 > th dose independent rect. 18 1
329 49.12 atmosphere 995.0 720 > th dose independent rect. 6 1
330 49.12 atmosphere 1015.0 720 < th dose independent rect. 6 1
331 49.12 atmosphere 1015.0 720 < th dose independent rect. 18 1
332 49.12 radiation 40.0 720 < th dose independent rect. 6 1
336 49.12 precipitation 0.1 720 < th dose independent rect. 6 1
338 49.12 temperature 30.0 720 < th dose independent rect. 1 22
339 49.12 temperature 10.0 720 > th dose independent rect. 7 23
341 49.12 precipitation 0.1 720 < th dose dependent rect. 6 1
342 49.12 wind 1.0 14400 < th dose dependent rect. 4 3
345 49.13 humidity 70.0 4320 > th dose independent rect. 16 1
349 49.13 wind 3.0 14400 > th dose dependent rect. 11 1
350 49.13 humidity 50.0 10 > th dose dependent rect. 18 12
355 49.14 temperature 30.0 1440 > th dose independent rect. 9 7
363 49.14 temperature 30.0 720 < th dose independent rect. 9 14
370 49.14 wind 9.0 10 < th dose independent rect. 6 21
373 49.14 temperature 30.0 1440 < th dose independent rect. 18 22
374 49.14 humidity 60.0 14400 < th dose dependent rect. 12 1
375 49.14 wind 9.0 10 < th dose dependent rect. 3 3
377 49.15 humidity 70.0 4320 < th dose independent rect. 16 1
380 49.15 wind 9.0 30 < th dose independent rect. 3 3
381 49.15 temperature 10.0 30 > th dose independent rect. 3 3
383 49.15 temperature 30.0 30 < th dose independent rect. 3 3
384 49.15 humidity 50.0 30 > th dose independent rect. 3 3
387 49.15 atmosphere 995.0 30 > th dose independent rect. 3 3
388 49.15 atmosphere 1010.0 30 < th dose independent rect. 3 3
390 49.15 radiation 10.0 30 < th dose independent rect. 3 3
404 49.15 temperature 30.0 1440 < th dose independent rect. 23 17
408 49.15 temperature 15.0 10 > th dose independent rect. 6 21
413 49.15 radiation 40.0 720 < th dose dependent rect. 18 1
435 49.16 temperature 30.0 1440 < th dose independent rect. 7 9
444 49.16 precipitation 0.1 30 < th dose independent rect. 6 21
445 49.16 temperature 30.0 1440 > th dose independent rect. 14 22
448 49.16 radiation 40.0 30 < th dose dependent rect. 18 12
449 49.16 humidity 70.0 4320 > th dose dependent rect. 24 13
451 49.16 precipitation 0.1 30 < th dose dependent rect. 6 21
461 49.17 temperature 30.0 1440 < th dose independent rect. 13 23
465 49.17 humidity 50.0 30 > th dose dependent rect. 3 3
472 49.18 precipitation 0.1 30 < th dose independent rect. 3 3
477 49.18 wind 1.0 30 < th dose independent rect. 11 13
485 49.18 precipitation 0.1 30 < th dose dependent rect. 3 3
486 49.18 temperature 20.0 30 > th dose dependent rect. 24 6
493 49.19 wind 1.0 14400 < th dose independent rect. 4 1
498 49.19 temperature 30.0 720 < th dose independent rect. 11 10
508 49.19 temperature 30.0 720 < th dose independent rect. 5 17
522 49.19 radiation 40.0 30 < th dose dependent rect. 3 3
523 49.19 humidity 80.0 4320 > th dose dependent rect. 3 10
529 49.20 wind 3.0 14400 > th dose independent rect. 10 1
530 49.20 atmosphere 995.0 720 > th dose independent rect. 18 1
549 49.20 wind 7.0 14400 < th dose dependent rect. 10 2
558 49.21 wind 7.0 720 < th dose independent rect. 19 7
570 49.22 humidity 50.0 14400 > th dose independent rect. 15 1
571 49.22 radiation 1.0 90 < th dose independent rect. 3 5
582 49.22 humidity 80.0 4320 > th dose dependent rect. 3 8
599 49.23 humidity 50.0 10 > th dose independent rect. 6 12
601 49.23 atmosphere 1015.0 30 < th dose independent rect. 6 21
605 49.23 humidity 70.0 4320 > th dose dependent sin 5 NA
623 49.24 temperature 30.0 1440 > th dose independent sin 23 NA
626 49.24 temperature 30.0 1440 < th dose independent sin 0 NA
630 49.24 temperature 30.0 1440 < th dose independent no NA NA
631 49.24 temperature 25.0 30 > th dose independent rect. 6 1
636 49.24 temperature 30.0 1440 < th dose independent rect. 8 17
649 49.24 temperature 30.0 1440 < th dose independent rect. 7 22
671 49.25 temperature 30.0 1440 > th dose independent no NA NA
676 49.25 humidity 50.0 14400 > th dose independent rect. 14 3
872 49.26 temperature 30.0 1440 > th dose independent sin 20 NA
888 49.26 precipitation 0.1 30 < th dose independent rect. 18 12
931 49.26 wind 1.0 14400 < th dose dependent rect. 2 5
941 49.26 precipitation 0.1 30 < th dose dependent rect. 18 12
954 49.27 humidity 90.0 4320 < th dose independent rect. 4 5
961 49.27 wind 1.0 30 > th dose independent rect. 6 12
980 49.27 atmosphere 995.0 30 > th dose independent rect. 7 23
981 49.27 humidity 50.0 4320 > th dose dependent sin 7 NA