Os06g0298300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0298300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 131.04 | 0.538 | 4.72 | 0.532 | 2.81 | 1.5 | 0.208 | 1.02 | 0.391 | 22 | 23.4 | 2 | -- | -- |
| 132.31 | 0.536 | 4.71 | 0.663 | 2.82 | 1.33 | 0.45 | -- | 0.425 | 22 | 23.84 | 2 | -- | -- |
| 131.09 | 0.537 | 4.73 | 0.506 | 2.81 | 1.54 | -- | 1.2 | 0.383 | 22 | 23.2 | 2 | -- | -- |
| 133.01 | 0.541 | 4.71 | 0.645 | 2.82 | 1.33 | -- | -- | 0.424 | 22 | 23.84 | 2 | -- | -- |
| 569.51 | 1.11 | 4.57 | 0.908 | -- | 2.38 | -- | 0.0555 | 0.713 | -- | 29.7 | 2 | -- | -- |
| 156.93 | 0.587 | 4.76 | 0.366 | 2.99 | -- | 0.412 | -- | 0.218 | 22.2 | -- | -- | -- | -- |
| 157.61 | 0.588 | 4.76 | 0.35 | 2.99 | -- | -- | -- | 0.217 | 22.2 | -- | -- | -- | -- |
| 568.95 | 1.11 | 4.57 | 0.957 | -- | 2.52 | -- | -- | 0.701 | -- | 29.7 | 2 | -- | -- |
| 143 | 0.56 | 4.73 | -- | 2.85 | 1.1 | -- | -- | 0.315 | 22.1 | 23.6 | 3 | -- | -- |
| 699.95 | 1.24 | 4.68 | 0.393 | -- | -- | -- | -- | 0.223 | -- | -- | -- | -- | -- |
| 160.83 | 0.593 | 4.76 | -- | 2.99 | -- | -- | -- | 0.178 | 22.2 | -- | -- | -- | -- |
| 591.65 | 1.13 | 4.61 | -- | -- | 2.27 | -- | -- | 0.558 | -- | 29.8 | 2 | -- | -- |
| 704.03 | 1.24 | 4.69 | -- | -- | -- | -- | -- | 0.18 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 126.95 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 11 |
| 2 | 127.35 | temperature | 20 | 90 | > th | dose independent | rect. | 20 | 11 |
| 7 | 129.62 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 11 |
| 9 | 129.80 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 14 |
| 10 | 129.96 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 16 | 130.56 | temperature | 25 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 24 | 130.92 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 14 |
| 48 | 131.24 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 53 | 131.29 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 11 |
| 54 | 131.30 | temperature | 20 | 270 | < th | dose dependent | sin | 13 | NA |
| 73 | 131.46 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 90 | 131.65 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 23 |
| 119 | 131.93 | temperature | 25 | 720 | < th | dose dependent | sin | 17 | NA |
| 127 | 131.98 | temperature | 25 | 10 | < th | dose dependent | rect. | 6 | 22 |
| 148 | 132.11 | temperature | 20 | 10 | > th | dose independent | rect. | 10 | 23 |
| 240 | 132.47 | temperature | 20 | 10 | > th | dose independent | rect. | 10 | 21 |
| 284 | 132.67 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 13 |
| 318 | 132.78 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 345 | 132.84 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 349 | 132.85 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 351 | 132.86 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 375 | 132.94 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 400 | 133.01 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 403 | 133.02 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 411 | 133.05 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 416 | 133.07 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 436 | 133.13 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 438 | 133.14 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 3 |
| 439 | 133.15 | temperature | 20 | 720 | < th | dose independent | rect. | 12 | 12 |
| 541 | 133.66 | temperature | 20 | 270 | > th | dose independent | rect. | 9 | 22 |
| 626 | 134.02 | temperature | 20 | 10 | > th | dose independent | sin | 13 | NA |
| 658 | 134.10 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 22 |
| 661 | 134.11 | temperature | 20 | 10 | < th | dose independent | sin | 12 | NA |
| 663 | 134.11 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 3 |
| 705 | 134.23 | temperature | 20 | 10 | < th | dose independent | rect. | 16 | 17 |
| 721 | 134.28 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 5 |
| 734 | 134.33 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 3 |
| 741 | 134.37 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 6 |
| 818 | 134.59 | temperature | 20 | 720 | > th | dose independent | sin | 18 | NA |
| 824 | 134.60 | temperature | 15 | 10 | > th | dose dependent | rect. | 10 | 23 |
| 929 | 134.94 | temperature | 20 | 10 | > th | dose independent | rect. | 12 | 19 |
| 998 | 135.16 | temperature | 20 | 270 | < th | dose independent | rect. | 14 | 18 |