Os06g0296000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os06g0296000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 107.04 | 0.486 | 3.22 | 0.31 | 0.83 | -0.461 | 0.789 | -2.35 | 0.314 | 20.1 | 68 | 6657 | -- | -- |
| 111.64 | 0.492 | 3.25 | 0.407 | 0.785 | -0.473 | 0.623 | -- | 0.338 | 20.2 | 74.99 | 2822 | -- | -- |
| 108.74 | 0.486 | 3.22 | 0.288 | 0.807 | -0.485 | -- | -2.33 | 0.306 | 20.1 | 67 | 6898 | -- | -- |
| 112.64 | 0.494 | 3.23 | 0.439 | 0.79 | -0.506 | -- | -- | 0.372 | 20 | 75 | 2845 | -- | -- |
| 143.44 | 0.558 | 3.2 | 0.271 | -- | -0.504 | -- | -2.3 | 0.316 | -- | 66.07 | 7191 | -- | -- |
| 118.58 | 0.511 | 3.24 | 0.397 | 0.801 | -- | 0.619 | -- | 0.298 | 19.9 | -- | -- | -- | -- |
| 119.7 | 0.512 | 3.24 | 0.381 | 0.8 | -- | -- | -- | 0.298 | 19.9 | -- | -- | -- | -- |
| 146.69 | 0.564 | 3.21 | 0.404 | -- | -0.608 | -- | -- | 0.359 | -- | 76 | 2894 | -- | -- |
| 115.94 | 0.501 | 3.22 | -- | 0.881 | -0.679 | -- | -- | 0.41 | 20 | 75 | 6624 | -- | -- |
| 154.58 | 0.581 | 3.22 | 0.372 | -- | -- | -- | -- | 0.288 | -- | -- | -- | -- | -- |
| 123.52 | 0.52 | 3.25 | -- | 0.798 | -- | -- | -- | 0.256 | 20 | -- | -- | -- | -- |
| 151.04 | 0.572 | 3.22 | -- | -- | -0.579 | -- | -- | 0.32 | -- | 75.47 | 2893 | -- | -- |
| 158.23 | 0.587 | 3.23 | -- | -- | -- | -- | -- | 0.247 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 103.39 | humidity | 80.0 | 720 | < th | dose independent | rect. | 11 | 2 |
| 2 | 103.45 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 3 | 103.45 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 4 | 103.54 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 5 | 103.61 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 6 | 103.70 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 7 | 103.78 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 5 |
| 9 | 103.79 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 24 | 4 |
| 11 | 103.82 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 12 | 103.90 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 13 | 103.90 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 14 | 103.92 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 17 | 104.13 | wind | 3.0 | 14400 | < th | dose independent | rect. | 2 | 2 |
| 20 | 104.32 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 21 | 104.32 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 3 |
| 25 | 104.36 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 27 | 104.38 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 5 |
| 28 | 104.40 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 37 | 104.53 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 39 | 104.54 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 41 | 104.54 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 44 | 104.55 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 45 | 104.56 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 15 | 19 |
| 47 | 104.57 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 71 | 104.73 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 14 | 21 |
| 79 | 104.78 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 5 |
| 80 | 104.78 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 5 |
| 83 | 104.80 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 92 | 104.84 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 102 | 104.87 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 108 | 104.91 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 120 | 104.96 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 10 |
| 134 | 104.98 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 10 |
| 137 | 104.98 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 10 |
| 138 | 104.99 | wind | 3.0 | 14400 | > th | dose independent | rect. | 2 | 3 |
| 141 | 104.99 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 3 | 3 |
| 214 | 105.21 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 237 | 105.28 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 5 |
| 242 | 105.29 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 285 | 105.46 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 293 | 105.46 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 300 | 105.49 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 324 | 105.57 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 8 | 9 |
| 327 | 105.58 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 14 | 7 |
| 354 | 105.62 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 374 | 105.66 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 14 | 8 |
| 380 | 105.66 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 10 | 7 |
| 413 | 105.71 | humidity | 60.0 | 14400 | > th | dose independent | sin | 11 | NA |
| 422 | 105.72 | humidity | 80.0 | 720 | < th | dose independent | rect. | 10 | 4 |
| 431 | 105.73 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 11 |
| 460 | 105.79 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 499 | 105.85 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 6 | 11 |
| 535 | 105.88 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 24 | 10 |
| 547 | 105.92 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 7 |
| 568 | 105.96 | humidity | 60.0 | 14400 | < th | dose independent | no | NA | NA |
| 682 | 106.02 | humidity | 60.0 | 14400 | < th | dose independent | sin | 11 | NA |
| 686 | 106.03 | humidity | 60.0 | 14400 | < th | dose independent | sin | 0 | NA |
| 692 | 106.03 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 6 |
| 757 | 106.14 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 10 |
| 766 | 106.14 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 21 | 20 |
| 852 | 106.27 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 6 | 16 |
| 862 | 106.28 | humidity | 60.0 | 14400 | > th | dose independent | no | NA | NA |
| 968 | 106.33 | humidity | 60.0 | 14400 | > th | dose independent | sin | 3 | NA |