Os06g0295700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0295700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.69 | 0.347 | 9.27 | -1.43 | 0.875 | -0.49 | 0.582 | -1.37 | 0.0819 | 0.989 | 59.37 | 4462 | -- | -- |
| 57.04 | 0.352 | 9.26 | -1.45 | 0.919 | -0.546 | 0.605 | -- | 0.0489 | 0.938 | 58.94 | 3985 | -- | -- |
| 56.03 | 0.349 | 9.27 | -1.43 | 0.877 | -0.479 | -- | -1.36 | 0.0811 | 1.04 | 58.24 | 4477 | -- | -- |
| 58.1 | 0.355 | 9.27 | -1.5 | 0.875 | -0.452 | -- | -- | 0.0206 | 0.923 | 64 | 3315 | -- | -- |
| 92.56 | 0.451 | 9.25 | -1.5 | -- | -0.612 | -- | -0.28 | 0.0821 | -- | 63 | 4586 | -- | -- |
| 62.14 | 0.37 | 9.24 | -1.51 | 0.867 | -- | 0.539 | -- | 0.16 | 0.979 | -- | -- | -- | -- |
| 63.35 | 0.373 | 9.24 | -1.53 | 0.867 | -- | -- | -- | 0.157 | 1.04 | -- | -- | -- | -- |
| 92.79 | 0.451 | 9.25 | -1.51 | -- | -0.618 | -- | -- | 0.0776 | -- | 63 | 4586 | -- | -- |
| 100.94 | 0.468 | 9.18 | -- | 0.855 | -0.749 | -- | -- | 0.316 | 0.554 | 51 | 4377 | -- | -- |
| 110.06 | 0.49 | 9.23 | -1.49 | -- | -- | -- | -- | 0.174 | -- | -- | -- | -- | -- |
| 124.79 | 0.523 | 9.2 | -- | 0.842 | -- | -- | -- | 0.327 | 0.963 | -- | -- | -- | -- |
| 141.94 | 0.557 | 9.19 | -- | -- | -0.567 | -- | -- | 0.331 | -- | 68.1 | 3137 | -- | -- |
| 168.94 | 0.607 | 9.19 | -- | -- | -- | -- | -- | 0.339 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.61 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 4 | 51.74 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 7 | 51.92 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 11 | 51.99 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 13 | 52.02 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 16 | 52.10 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 5 |
| 21 | 52.18 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 34 | 52.29 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 117 | 52.82 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 169 | 53.05 | temperature | 25.0 | 14400 | < th | dose independent | sin | 23 | NA |
| 193 | 53.15 | temperature | 25.0 | 14400 | > th | dose independent | sin | 23 | NA |
| 219 | 53.25 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 225 | 53.26 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 235 | 53.30 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 253 | 53.35 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 8 | 2 |
| 264 | 53.38 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 265 | 53.39 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 271 | 53.41 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 17 | 3 |
| 283 | 53.44 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 302 | 53.48 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 11 |
| 306 | 53.48 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 11 |
| 309 | 53.49 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 11 |
| 354 | 53.57 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 8 | 6 |
| 357 | 53.58 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 11 | 2 |
| 376 | 53.60 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 8 | 12 |
| 388 | 53.62 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 405 | 53.64 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 459 | 53.71 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 3 |
| 468 | 53.72 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 11 | 4 |
| 490 | 53.74 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 495 | 53.74 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 4 |
| 507 | 53.74 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 8 | 14 |
| 514 | 53.75 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 12 | 8 |
| 520 | 53.76 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 8 | 5 |
| 522 | 53.76 | temperature | 20.0 | 14400 | > th | dose dependent | sin | 22 | NA |
| 532 | 53.76 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 8 | 12 |
| 589 | 53.80 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 660 | 53.84 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 694 | 53.86 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 820 | 53.93 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 865 | 53.95 | temperature | 30.0 | 14400 | < th | dose dependent | sin | 22 | NA |
| 879 | 53.96 | humidity | 50.0 | 14400 | > th | dose independent | sin | 13 | NA |
| 956 | 54.01 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 965 | 54.01 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 4 |
| 983 | 54.02 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 24 | 1 |