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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0293500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.85 (0.0697) R2 : 0.541
β1 : 2.75 (0.232) R2dD : 0.216 R2D : -0.18
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.0571 (0.299) R2dE : 0.000119 R2E : -0.136
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -8.1 (1.19) R2dD*E : 0.0858 R2D*E : -0.372
γ1 : 2.75 (0.251) R2dN8 : 0.822 R2N8 : 0.344
σ : 0.976
deviance : 439.54
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 2.72
memory length : 4352
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.9
open length of G : 0.871

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
431.62 0.976 3.84 2.76 0.264 -0.187 1.35 -7.49 2.67 2.33 2.951 4349 2.89 0.886
484.17 1.03 3.87 1.99 0.175 -0.419 1.25 -- 2.37 1.11 2.951 4349 2.89 0.886
436.01 0.973 3.84 2.72 0.267 -0.0793 -- -7.49 2.71 2.33 2.727 4347 2.91 0.868
487.17 1.03 3.88 1.95 0.297 -1.08 -- -- 2.33 4.75 7.11 5738 3.16 0.7
439.54 0.976 3.85 2.75 -- -0.0571 -- -8.1 2.75 -- 2.72 4352 2.9 0.871
485.45 1.03 3.88 2 0.118 -- 1.3 -- 2.34 0.521 -- -- -- --
489.46 1.04 3.87 1.94 0.278 -- -- -- 2.33 4.8 -- -- -- --
491.79 1.04 3.88 1.96 -- -0.938 -- -- 2.33 -- 7.11 5738 3.16 0.7
587.08 1.13 3.92 -- 0.33 -0.929 -- -- 2.11 4.59 7.11 5738 3.16 0.7
493.54 1.04 3.88 1.95 -- -- -- -- 2.34 -- -- -- -- --
588.78 1.14 3.92 -- 0.313 -- -- -- 2.11 4.62 -- -- -- --
592.83 1.14 3.93 -- -- -0.769 -- -- 2.12 -- 7.11 5738 3.16 0.7
594.01 1.14 3.93 -- -- -- -- -- 2.12 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 417.24 temperature 30.0 43200 > th dose dependent rect. 18 15
2 417.59 temperature 30.0 43200 < th dose independent rect. 4 5
3 417.72 temperature 30.0 43200 < th dose independent rect. 24 9
4 417.75 temperature 30.0 43200 < th dose independent rect. 2 7
5 417.77 temperature 30.0 43200 < th dose independent rect. 20 13
11 418.23 temperature 30.0 43200 > th dose dependent rect. 18 1
29 418.41 temperature 30.0 43200 > th dose dependent rect. 8 1
44 418.77 temperature 30.0 43200 > th dose independent rect. 8 1
78 426.20 temperature 30.0 43200 > th dose independent rect. 18 1
93 426.25 temperature 30.0 43200 < th dose independent rect. 18 1
94 426.27 temperature 30.0 43200 < th dose independent rect. 18 4
100 426.49 temperature 30.0 43200 < th dose independent rect. 18 7
102 426.57 temperature 30.0 43200 < th dose independent rect. 18 9
170 429.98 temperature 25.0 43200 > th dose dependent rect. 4 1
230 432.19 temperature 30.0 43200 > th dose dependent sin 10 NA
297 434.59 temperature 25.0 43200 > th dose dependent rect. 22 1
313 435.71 temperature 30.0 43200 > th dose independent sin 10 NA
331 435.86 temperature 30.0 43200 < th dose independent sin 10 NA
414 436.88 temperature 25.0 43200 > th dose independent rect. 5 1
453 437.77 temperature 25.0 43200 < th dose independent rect. 5 1
490 438.26 temperature 30.0 43200 > th dose dependent no NA NA
492 438.26 temperature 30.0 43200 > th dose dependent rect. 8 11
694 438.96 humidity 70.0 43200 > th dose dependent rect. 18 1
858 439.72 wind 3.0 4320 < th dose independent rect. 3 1
967 440.86 precipitation 0.1 43200 > th dose dependent rect. 23 6
990 441.06 humidity 80.0 43200 > th dose independent rect. 8 3
998 441.27 precipitation 0.1 43200 > th dose dependent rect. 22 8