Os06g0292600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os06g0292600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 165.47 | 0.604 | 3.26 | 0.268 | 0.257 | -0.561 | -1.05 | 2.03 | 0.371 | 15.1 | 21.5 | 3276 | -- | -- |
| 173.6 | 0.614 | 3.35 | -0.243 | 0.292 | -0.694 | -0.96 | -- | 0.264 | 15 | 21.7 | 4792 | -- | -- |
| 169.06 | 0.606 | 3.27 | 0.255 | 0.252 | -0.573 | -- | 2.04 | 0.372 | 15.1 | 21.5 | 3307 | -- | -- |
| 176.32 | 0.618 | 3.36 | -0.23 | 0.237 | -0.767 | -- | -- | 0.239 | 14.8 | 21.4 | 3349 | -- | -- |
| 172.69 | 0.612 | 3.26 | 0.256 | -- | -0.582 | -- | 2.06 | 0.369 | -- | 21.5 | 3307 | -- | -- |
| 187.12 | 0.641 | 3.4 | -0.678 | 0.277 | -- | -1.08 | -- | -0.00318 | 15 | -- | -- | -- | -- |
| 191.04 | 0.647 | 3.41 | -0.702 | 0.273 | -- | -- | -- | -0.00959 | 14.9 | -- | -- | -- | -- |
| 175.49 | 0.617 | 3.32 | 0.155 | -- | -0.987 | -- | -- | 0.334 | -- | 17.51 | 22880 | -- | -- |
| 177.46 | 0.62 | 3.34 | -- | 0.259 | -0.907 | -- | -- | 0.292 | 15.3 | 21.11 | 3358 | -- | -- |
| 195.33 | 0.653 | 3.41 | -0.714 | -- | -- | -- | -- | -0.0166 | -- | -- | -- | -- | -- |
| 204.04 | 0.668 | 3.39 | -- | 0.287 | -- | -- | -- | 0.0686 | 14.9 | -- | -- | -- | -- |
| 174.97 | 0.616 | 3.35 | -- | -- | -1.07 | -- | -- | 0.246 | -- | 17.56 | 22729 | -- | -- |
| 208.78 | 0.674 | 3.39 | -- | -- | -- | -- | -- | 0.0626 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 162.40 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 2 | 162.57 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 3 | 162.91 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 4 | 162.94 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 6 | 163.03 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 5 |
| 9 | 163.18 | wind | 3 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 14 | 163.46 | wind | 3 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 16 | 163.52 | wind | 5 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 20 | 163.62 | wind | 1 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 41 | 164.20 | wind | 5 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 46 | 164.27 | wind | 3 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 51 | 164.36 | wind | 5 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 68 | 164.46 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 77 | 164.55 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 79 | 164.55 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 12 |
| 81 | 164.56 | wind | 3 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 83 | 164.57 | wind | 1 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 93 | 164.61 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 17 |
| 96 | 164.63 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 21 |
| 99 | 164.65 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 112 | 164.72 | wind | 5 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 119 | 164.74 | wind | 5 | 43200 | > th | dose dependent | rect. | 8 | 7 |
| 124 | 164.80 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 19 |
| 127 | 164.82 | wind | 5 | 43200 | > th | dose dependent | sin | 1 | NA |
| 135 | 164.83 | wind | 5 | 43200 | > th | dose dependent | rect. | 6 | 11 |
| 144 | 164.84 | wind | 5 | 43200 | > th | dose dependent | rect. | 16 | 23 |
| 145 | 164.85 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 20 |
| 166 | 164.86 | wind | 5 | 43200 | > th | dose dependent | rect. | 21 | 23 |
| 167 | 164.87 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 20 |
| 176 | 164.87 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 23 |
| 193 | 164.89 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |
| 235 | 164.93 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 258 | 164.96 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 277 | 164.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 15 |
| 300 | 165.00 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 301 | 165.00 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 302 | 165.00 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 317 | 165.00 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 23 |
| 322 | 165.01 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 20 |
| 336 | 165.02 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 18 |
| 337 | 165.02 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 19 |
| 347 | 165.03 | wind | 7 | 43200 | < th | dose independent | sin | 3 | NA |
| 348 | 165.03 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 365 | 165.04 | wind | 7 | 43200 | > th | dose independent | sin | 3 | NA |
| 369 | 165.04 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 370 | 165.04 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 396 | 165.06 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 400 | 165.06 | wind | 7 | 43200 | < th | dose independent | rect. | 2 | 14 |
| 417 | 165.07 | wind | 5 | 43200 | < th | dose independent | rect. | 8 | 20 |
| 434 | 165.08 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 19 |
| 443 | 165.08 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 23 |
| 466 | 165.10 | wind | 7 | 43200 | > th | dose independent | rect. | 21 | 23 |
| 471 | 165.11 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 472 | 165.11 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 492 | 165.11 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 500 | 165.12 | wind | 7 | 43200 | > th | dose independent | rect. | 2 | 13 |
| 515 | 165.13 | wind | 7 | 43200 | < th | dose independent | no | NA | NA |
| 586 | 165.17 | wind | 5 | 43200 | > th | dose independent | no | NA | NA |
| 641 | 165.19 | wind | 7 | 43200 | < th | dose independent | rect. | 23 | 23 |
| 660 | 165.20 | wind | 5 | 43200 | > th | dose independent | rect. | 23 | 23 |
| 673 | 165.21 | wind | 5 | 43200 | > th | dose independent | sin | 0 | NA |
| 768 | 165.26 | wind | 5 | 43200 | < th | dose independent | sin | 0 | NA |
| 785 | 165.26 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 812 | 165.27 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 14 |
| 940 | 165.34 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 980 | 165.36 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 19 |