Os06g0291600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein kinase G11A (EC 2.7.1.-) (Fragment).
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Os06g0291600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein kinase G11A (EC 2.7.1.-) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.39 | 0.371 | 6.23 | -0.113 | 1.5 | -0.286 | 0.596 | 0.628 | 0.0843 | 21.2 | 19.84 | 177 | -- | -- |
| 63.5 | 0.371 | 6.22 | -0.0308 | 1.48 | -0.391 | 0.725 | -- | 0.0909 | 21.3 | 19.4 | 209 | -- | -- |
| 63.52 | 0.371 | 6.23 | -0.13 | 1.49 | -0.258 | -- | 0.768 | 0.0848 | 21.2 | 19.46 | 130 | -- | -- |
| 64.55 | 0.377 | 6.22 | -0.0658 | 1.52 | -0.419 | -- | -- | 0.102 | 21.2 | 19.21 | 207 | -- | -- |
| 155.53 | 0.581 | 6.34 | -0.908 | -- | -0.899 | -- | 2.73 | -0.301 | -- | 26.1 | 695 | -- | -- |
| 67.92 | 0.386 | 6.21 | 0.0831 | 1.48 | -- | 0.715 | -- | 0.162 | 21.1 | -- | -- | -- | -- |
| 69.7 | 0.391 | 6.21 | 0.0585 | 1.48 | -- | -- | -- | 0.161 | 21.1 | -- | -- | -- | -- |
| 150.07 | 0.571 | 6.23 | -0.242 | -- | -0.991 | -- | -- | -0.131 | -- | 26.06 | 695 | -- | -- |
| 64.65 | 0.377 | 6.22 | -- | 1.52 | -0.403 | -- | -- | 0.111 | 21.2 | 19.13 | 142 | -- | -- |
| 195.39 | 0.653 | 6.17 | 0.0616 | -- | -- | -- | -- | 0.153 | -- | -- | -- | -- | -- |
| 69.79 | 0.391 | 6.21 | -- | 1.48 | -- | -- | -- | 0.155 | 21.1 | -- | -- | -- | -- |
| 151.54 | 0.573 | 6.22 | -- | -- | -0.952 | -- | -- | -0.0952 | -- | 26 | 695 | -- | -- |
| 195.49 | 0.653 | 6.17 | -- | -- | -- | -- | -- | 0.146 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.23 | temperature | 20 | 270 | < th | dose independent | rect. | 15 | 15 |
| 24 | 58.88 | temperature | 20 | 270 | < th | dose independent | sin | 13 | NA |
| 43 | 59.13 | temperature | 20 | 270 | < th | dose dependent | rect. | 22 | 7 |
| 57 | 59.26 | temperature | 20 | 90 | > th | dose independent | rect. | 13 | 15 |
| 60 | 59.32 | temperature | 20 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 103 | 59.48 | temperature | 20 | 10 | < th | dose dependent | rect. | 15 | 16 |
| 301 | 59.94 | temperature | 20 | 720 | < th | dose independent | rect. | 12 | 13 |
| 345 | 60.07 | temperature | 20 | 90 | < th | dose dependent | sin | 11 | NA |
| 370 | 60.17 | temperature | 20 | 10 | < th | dose dependent | sin | 11 | NA |
| 383 | 60.21 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 467 | 60.42 | temperature | 20 | 720 | > th | dose independent | rect. | 13 | 11 |
| 505 | 60.50 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 599 | 60.68 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 21 |
| 686 | 60.89 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 690 | 60.89 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 694 | 60.90 | temperature | 20 | 270 | > th | dose independent | sin | 15 | NA |
| 717 | 60.95 | temperature | 20 | 90 | > th | dose independent | rect. | 13 | 22 |
| 754 | 61.04 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 2 |
| 819 | 61.16 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 821 | 61.16 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 922 | 61.36 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 8 |
| 949 | 61.44 | temperature | 20 | 720 | < th | dose dependent | rect. | 16 | 4 |