Os06g0291000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os06g0291000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 292.7 | 0.804 | 4.04 | -2.15 | 0.432 | -1.03 | -0.676 | 0.19 | 0.246 | 14.1 | 8.6 | 5107 | -- | -- |
| 292.63 | 0.797 | 4.04 | -2.13 | 0.436 | -1.06 | -0.679 | -- | 0.232 | 14.1 | 8.5 | 5118 | -- | -- |
| 294.36 | 0.799 | 4.04 | -2.17 | 0.436 | -1.03 | -- | 0.188 | 0.237 | 14.1 | 8.531 | 5118 | -- | -- |
| 294.38 | 0.799 | 4.05 | -2.15 | 0.436 | -1.06 | -- | -- | 0.229 | 14.1 | 8.55 | 5118 | -- | -- |
| 304.22 | 0.812 | 4.05 | -2.18 | -- | -1.07 | -- | -0.0129 | 0.229 | -- | 8.3 | 4967 | -- | -- |
| 319.38 | 0.838 | 3.99 | -2.52 | 0.492 | -- | -0.683 | -- | 0.467 | 14.9 | -- | -- | -- | -- |
| 320.97 | 0.839 | 4 | -2.54 | 0.489 | -- | -- | -- | 0.463 | 14.8 | -- | -- | -- | -- |
| 304.22 | 0.812 | 4.05 | -2.18 | -- | -1.07 | -- | -- | 0.224 | -- | 8.297 | 4967 | -- | -- |
| 404.7 | 0.937 | 4.13 | -- | 0.415 | -1.91 | -- | -- | 0.217 | 13.6 | 7.596 | 6932 | -- | -- |
| 334.8 | 0.855 | 4 | -2.56 | -- | -- | -- | -- | 0.45 | -- | -- | -- | -- | -- |
| 490.8 | 1.04 | 3.93 | -- | 0.539 | -- | -- | -- | 0.745 | 14.9 | -- | -- | -- | -- |
| 403.23 | 0.935 | 3.99 | -- | -- | -1.87 | -- | -- | 0.401 | -- | 7.5 | 5109 | -- | -- |
| 507.58 | 1.05 | 3.93 | -- | -- | -- | -- | -- | 0.734 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 279.03 | wind | 9 | 1440 | < th | dose independent | rect. | 7 | 3 |
| 3 | 281.95 | wind | 9 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 4 | 284.94 | wind | 9 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 5 | 285.40 | wind | 9 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 7 | 286.27 | temperature | 25 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 10 | 287.11 | temperature | 25 | 30 | > th | dose independent | rect. | 1 | 8 |
| 11 | 287.26 | temperature | 25 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 22 | 288.06 | wind | 9 | 1440 | < th | dose independent | rect. | 3 | 7 |
| 23 | 288.21 | wind | 1 | 270 | < th | dose dependent | rect. | 22 | 1 |
| 48 | 289.44 | wind | 7 | 4320 | > th | dose dependent | rect. | 6 | 4 |
| 60 | 290.64 | wind | 7 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 66 | 290.83 | wind | 7 | 4320 | > th | dose dependent | rect. | 2 | 8 |
| 71 | 291.06 | temperature | 25 | 720 | < th | dose independent | rect. | 23 | 4 |
| 72 | 291.10 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 3 |
| 75 | 291.12 | temperature | 25 | 1440 | > th | dose dependent | rect. | 24 | 7 |
| 89 | 291.53 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 3 |
| 93 | 291.61 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 1 |
| 109 | 291.96 | temperature | 25 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 127 | 292.34 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 137 | 292.49 | wind | 1 | 270 | < th | dose independent | rect. | 22 | 1 |
| 154 | 292.67 | wind | 9 | 1440 | < th | dose independent | rect. | 24 | 10 |
| 190 | 293.23 | temperature | 20 | 90 | > th | dose dependent | rect. | 2 | 7 |
| 197 | 293.34 | temperature | 20 | 30 | > th | dose dependent | rect. | 4 | 5 |
| 206 | 293.43 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 222 | 293.56 | temperature | 25 | 10 | > th | dose independent | rect. | 20 | 13 |
| 236 | 293.72 | temperature | 25 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 324 | 294.50 | wind | 7 | 4320 | > th | dose dependent | sin | 7 | NA |
| 326 | 294.52 | wind | 7 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 329 | 294.52 | wind | 7 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 333 | 294.53 | temperature | 25 | 30 | > th | dose independent | rect. | 18 | 15 |
| 334 | 294.54 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 2 | 3 |
| 336 | 294.57 | wind | 5 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 344 | 294.64 | wind | 7 | 4320 | > th | dose independent | sin | 7 | NA |
| 346 | 294.65 | wind | 5 | 4320 | > th | dose dependent | rect. | 22 | 16 |
| 359 | 294.73 | temperature | 25 | 270 | > th | dose dependent | rect. | 2 | 4 |
| 360 | 294.74 | wind | 7 | 4320 | < th | dose independent | sin | 7 | NA |
| 418 | 295.19 | wind | 7 | 4320 | > th | dose independent | rect. | 21 | 17 |
| 426 | 295.25 | wind | 7 | 4320 | < th | dose independent | rect. | 22 | 14 |
| 430 | 295.32 | wind | 7 | 4320 | < th | dose independent | rect. | 21 | 16 |
| 471 | 295.55 | wind | 5 | 4320 | > th | dose independent | rect. | 1 | 12 |
| 537 | 295.87 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 554 | 295.93 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 639 | 296.30 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 710 | 296.65 | radiation | 30 | 10 | < th | dose dependent | rect. | 10 | 1 |
| 740 | 296.74 | wind | 1 | 30 | < th | dose dependent | rect. | 22 | 4 |
| 750 | 296.78 | humidity | 90 | 10 | < th | dose independent | rect. | 3 | 6 |
| 792 | 296.98 | radiation | 40 | 90 | < th | dose independent | rect. | 11 | 22 |
| 793 | 296.99 | radiation | 40 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 796 | 297.00 | wind | 1 | 30 | < th | dose dependent | rect. | 17 | 9 |
| 801 | 297.02 | radiation | 40 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 839 | 297.09 | wind | 3 | 1440 | < th | dose independent | rect. | 3 | 2 |
| 840 | 297.09 | wind | 5 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 880 | 297.19 | wind | 7 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 886 | 297.22 | wind | 7 | 4320 | < th | dose independent | rect. | 7 | 6 |
| 901 | 297.26 | wind | 5 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 928 | 297.40 | radiation | 40 | 4320 | > th | dose independent | sin | 10 | NA |
| 946 | 297.51 | wind | 1 | 270 | < th | dose dependent | rect. | 22 | 4 |
| 950 | 297.53 | wind | 3 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 961 | 297.55 | wind | 3 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 967 | 297.56 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 2 | 7 |
| 968 | 297.56 | wind | 9 | 1440 | < th | dose dependent | rect. | 2 | 8 |
| 974 | 297.58 | wind | 3 | 1440 | > th | dose independent | rect. | 2 | 3 |
| 982 | 297.62 | radiation | 1 | 30 | > th | dose independent | rect. | 9 | 21 |
| 985 | 297.64 | wind | 7 | 4320 | > th | dose independent | rect. | 11 | 2 |
| 991 | 297.64 | temperature | 25 | 10 | > th | dose dependent | rect. | 20 | 13 |