Os06g0287700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NBS-LRR disease resistance protein homologue (Fragment).
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Os06g0287700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NBS-LRR disease resistance protein homologue (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.52 | 0.26 | 10.7 | 0.431 | 0.621 | -0.723 | 0.282 | 1.85 | 0.000617 | 4.62 | 17.2 | 77 | -- | -- |
| 32.68 | 0.266 | 10.8 | 0.172 | 0.624 | -0.663 | -0.234 | -- | -0.0607 | 3.72 | 16.9 | 282 | -- | -- |
| 30.64 | 0.258 | 10.7 | 0.411 | 0.612 | -0.723 | -- | 1.69 | -0.00737 | 4.46 | 17.36 | 112 | -- | -- |
| 32.79 | 0.267 | 10.8 | 0.141 | 0.61 | -0.739 | -- | -- | -0.0775 | 4.08 | 14.97 | 230 | -- | -- |
| 43.88 | 0.309 | 10.7 | 0.57 | -- | -1.23 | -- | 1.73 | 0.0974 | -- | 18.64 | 164 | -- | -- |
| 38.77 | 0.292 | 10.8 | -0.023 | 0.825 | -- | -0.189 | -- | -0.193 | 4.1 | -- | -- | -- | -- |
| 38.86 | 0.292 | 10.8 | -0.0207 | 0.824 | -- | -- | -- | -0.192 | 4.14 | -- | -- | -- | -- |
| 46.35 | 0.317 | 10.7 | 0.284 | -- | -1.25 | -- | -- | 0.0165 | -- | 17 | 184 | -- | -- |
| 33.26 | 0.269 | 10.8 | -- | 0.628 | -0.686 | -- | -- | -0.109 | 3.99 | 14.75 | 253 | -- | -- |
| 75.71 | 0.407 | 10.8 | 0.0126 | -- | -- | -- | -- | -0.17 | -- | -- | -- | -- | -- |
| 38.87 | 0.292 | 10.8 | -- | 0.824 | -- | -- | -- | -0.19 | 4.14 | -- | -- | -- | -- |
| 48.3 | 0.324 | 10.8 | -- | -- | -1.15 | -- | -- | -0.026 | -- | 17.4 | 184 | -- | -- |
| 75.72 | 0.406 | 10.8 | -- | -- | -- | -- | -- | -0.172 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.37 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 21 |
| 2 | 29.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 20 |
| 24 | 30.07 | temperature | 15 | 90 | > th | dose dependent | rect. | 24 | 23 |
| 25 | 30.07 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 39 | 30.49 | temperature | 10 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 50 | 30.68 | temperature | 20 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 59 | 30.74 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 60 | 30.74 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 65 | 30.80 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 72 | 30.84 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 78 | 30.89 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 112 | 31.07 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 122 | 31.11 | temperature | 15 | 90 | > th | dose dependent | rect. | 1 | 17 |
| 128 | 31.13 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 130 | 31.14 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 140 | 31.18 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 155 | 31.24 | temperature | 15 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 158 | 31.26 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 165 | 31.27 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 183 | 31.31 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 212 | 31.41 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 20 |
| 213 | 31.42 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 17 |
| 221 | 31.44 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 222 | 31.45 | temperature | 20 | 270 | > th | dose independent | rect. | 10 | 21 |
| 224 | 31.45 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 20 |
| 247 | 31.53 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 260 | 31.56 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 286 | 31.63 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 18 |
| 314 | 31.68 | temperature | 30 | 90 | < th | dose dependent | sin | 18 | NA |
| 341 | 31.73 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 9 |
| 346 | 31.74 | temperature | 30 | 10 | < th | dose dependent | sin | 17 | NA |
| 371 | 31.78 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 383 | 31.80 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 430 | 31.88 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 458 | 31.93 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 21 |
| 478 | 31.95 | temperature | 20 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 511 | 32.01 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 16 |
| 550 | 32.06 | temperature | 10 | 90 | > th | dose dependent | sin | 20 | NA |
| 681 | 32.20 | temperature | 20 | 10 | > th | dose independent | rect. | 1 | 17 |
| 764 | 32.31 | temperature | 10 | 270 | > th | dose dependent | sin | 22 | NA |
| 870 | 32.43 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 932 | 32.51 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 20 |
| 951 | 32.53 | temperature | 10 | 270 | > th | dose dependent | sin | 8 | NA |