Os06g0287500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NBS-LRR disease resistance protein homologue.
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Os06g0287500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NBS-LRR disease resistance protein homologue.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61 | 0.367 | 3.74 | 0.698 | 0.386 | -0.766 | 0.701 | -0.607 | 0.479 | 12.1 | 22.93 | 1064 | -- | -- |
| 61.87 | 0.366 | 3.76 | 0.487 | 0.382 | -0.741 | 0.564 | -- | 0.428 | 12.2 | 23 | 1066 | -- | -- |
| 62.74 | 0.369 | 3.74 | 0.669 | 0.379 | -0.785 | -- | -0.443 | 0.48 | 11.6 | 22.63 | 1086 | -- | -- |
| 63.18 | 0.37 | 3.76 | 0.511 | 0.386 | -0.765 | -- | -- | 0.422 | 11.6 | 23.01 | 1066 | -- | -- |
| 68.81 | 0.386 | 3.74 | 0.716 | -- | -0.759 | -- | -0.577 | 0.486 | -- | 23 | 1673 | -- | -- |
| 90.19 | 0.445 | 3.69 | 0.767 | 0.257 | -- | 0.526 | -- | 0.727 | 12.1 | -- | -- | -- | -- |
| 91.25 | 0.447 | 3.69 | 0.786 | 0.261 | -- | -- | -- | 0.728 | 11.3 | -- | -- | -- | -- |
| 69.57 | 0.388 | 3.77 | 0.469 | -- | -0.775 | -- | -- | 0.403 | -- | 23.2 | 1630 | -- | -- |
| 69.18 | 0.387 | 3.77 | -- | 0.404 | -0.885 | -- | -- | 0.346 | 11.7 | 23.2 | 1085 | -- | -- |
| 95.5 | 0.457 | 3.7 | 0.78 | -- | -- | -- | -- | 0.726 | -- | -- | -- | -- | -- |
| 107.54 | 0.485 | 3.71 | -- | 0.253 | -- | -- | -- | 0.641 | 11.1 | -- | -- | -- | -- |
| 74.75 | 0.403 | 3.78 | -- | -- | -0.89 | -- | -- | 0.317 | -- | 23.1 | 1657 | -- | -- |
| 111.53 | 0.493 | 3.72 | -- | -- | -- | -- | -- | 0.639 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.98 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 2 | 63.14 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 4 | 63.37 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 6 | 63.53 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 7 | 63.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 8 | 63.64 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 9 | 63.65 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 11 |
| 15 | 63.71 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 16 | 63.72 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 4 |
| 22 | 63.75 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 24 | 63.77 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 31 | 63.85 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 9 |
| 35 | 63.87 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 36 | 63.88 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 42 | 63.93 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 57 | 64.04 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 78 | 64.19 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 97 | 64.29 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 19 |
| 109 | 64.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 21 |
| 119 | 64.43 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 134 | 64.49 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 137 | 64.51 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 157 | 64.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 21 |
| 160 | 64.63 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 161 | 64.63 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 174 | 64.70 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 181 | 64.72 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 7 |
| 225 | 64.92 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 254 | 65.01 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 7 |
| 261 | 65.02 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 274 | 65.07 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 15 |
| 282 | 65.10 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 341 | 65.26 | temperature | 30 | 1440 | < th | dose dependent | sin | 13 | NA |
| 506 | 65.52 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 512 | 65.52 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 556 | 65.59 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 6 |
| 591 | 65.61 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 597 | 65.62 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 20 |
| 622 | 65.65 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 709 | 65.71 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 752 | 65.76 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 857 | 65.86 | temperature | 25 | 1440 | < th | dose independent | sin | 18 | NA |
| 873 | 65.87 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 941 | 65.93 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 23 |