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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0285400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Serine/threonine-specific kinase like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.71 (0.0495) R2 : 0.384
β1 : -3.92 (0.339) R2dD : 1.46 R2D : -1.25
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.08 (0.223) R2dE : 0.817 R2E : -0.411
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -17.8 (1.63) R2dD*E : 1.41 R2D*E : -1.37
γ1 : -0.325 (0.102) R2dN8 : 0.0362 R2N8 : -0.212
σ : 0.626
deviance : 180.62
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.07
memory length : 4476
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.27
open length of G : 1.15

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
176.67 0.625 3.75 -4.05 0.361 2.89 -0.111 -17.1 -0.471 8.42 23.92 4439 8.12 0.891
238.31 0.719 3.49 -2.84 0.503 2.23 0.0171 -- -0.481 9.1 12.59 47354 7.76 1.23
176.55 0.619 3.75 -4.02 0.36 2.91 -- -17.2 -0.47 8.26 23.95 4437 8.07 0.867
225.62 0.7 3.43 -2.05 0.428 1.67 -- -- -0.161 8.3 9.602 47520 0.133 5.75
180.62 0.626 3.71 -3.92 -- 3.08 -- -17.8 -0.325 -- 24.07 4476 7.27 1.15
253.41 0.746 3.28 -0.261 0.444 -- -0.413 -- 0.537 8.4 -- -- -- --
253.94 0.746 3.28 -0.274 0.445 -- -- -- 0.537 8.32 -- -- -- --
236.42 0.716 3.44 -2.11 -- 1.71 -- -- -0.152 -- 8.803 47520 2.39 2.98
253.29 0.745 3.27 -- 0.417 0.297 -- -- 0.549 9.9 9.602 47520 0.133 5.75
264.95 0.761 3.29 -0.271 -- -- -- -- 0.542 -- -- -- -- --
255.92 0.748 3.27 -- 0.444 -- -- -- 0.567 8.37 -- -- -- --
261.68 0.756 3.29 -- -- 0.372 -- -- 0.55 -- 8.803 47520 2.39 2.98
266.88 0.763 3.28 -- -- -- -- -- 0.572 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 188.28 temperature 25 4320 > th dose dependent rect. 9 1
30 193.84 temperature 25 14400 > th dose independent rect. 23 1
35 194.05 temperature 25 4320 < th dose independent rect. 7 3
37 194.21 temperature 25 4320 > th dose independent rect. 7 3
39 194.51 temperature 25 14400 < th dose independent rect. 23 1
55 195.38 temperature 25 14400 < th dose independent rect. 18 9
59 195.42 temperature 25 14400 > th dose independent rect. 18 9
61 195.45 temperature 25 4320 > th dose dependent sin 7 NA
74 195.84 temperature 30 14400 < th dose independent rect. 13 1
78 195.95 temperature 30 14400 < th dose independent rect. 12 3
82 196.00 temperature 25 14400 < th dose independent rect. 18 14
91 196.06 temperature 25 14400 > th dose independent rect. 18 15
92 196.09 temperature 25 43200 < th dose independent rect. 7 2
102 196.15 temperature 30 14400 > th dose independent rect. 12 3
106 196.21 temperature 25 43200 > th dose independent rect. 7 2
118 196.39 temperature 30 14400 > th dose independent rect. 13 1
122 196.41 temperature 25 14400 < th dose independent sin 10 NA
124 196.43 temperature 25 43200 > th dose independent rect. 18 1
127 196.46 temperature 25 14400 > th dose independent sin 10 NA
135 196.51 temperature 25 43200 < th dose independent rect. 18 1
137 196.51 humidity 90 43200 > th dose dependent rect. 13 12
161 196.69 temperature 25 43200 > th dose independent rect. 4 7
173 196.76 temperature 25 14400 < th dose independent rect. 22 12
177 196.77 temperature 25 43200 < th dose independent rect. 4 7
214 196.91 temperature 25 43200 > th dose dependent rect. 17 1
221 196.94 temperature 25 43200 > th dose independent rect. 17 18
229 196.99 temperature 25 14400 > th dose dependent sin 13 NA
232 197.00 temperature 25 43200 < th dose independent rect. 17 18
239 197.01 temperature 25 14400 > th dose dependent rect. 16 13
321 197.31 humidity 90 43200 > th dose dependent sin 17 NA
368 197.41 temperature 25 14400 > th dose dependent rect. 17 20
372 197.42 temperature 30 14400 < th dose independent rect. 12 20
375 197.43 temperature 30 14400 < th dose independent rect. 12 10
377 197.43 temperature 30 14400 < th dose independent rect. 12 13
407 197.48 temperature 20 43200 > th dose dependent rect. 5 1
443 197.55 temperature 25 43200 > th dose dependent rect. 8 12
449 197.56 temperature 25 43200 > th dose dependent rect. 11 10
479 197.60 temperature 25 43200 > th dose dependent sin 19 NA
501 197.62 humidity 90 43200 > th dose independent rect. 10 19
515 197.63 temperature 30 43200 > th dose independent rect. 15 1
692 197.76 temperature 25 43200 > th dose dependent rect. 8 5
728 197.78 temperature 25 43200 > th dose dependent rect. 10 2
742 197.79 temperature 25 43200 > th dose dependent no NA NA
749 197.79 temperature 25 43200 > th dose dependent rect. 16 23
772 197.82 temperature 25 43200 > th dose dependent rect. 14 23
783 197.84 humidity 90 43200 < th dose independent rect. 10 19
812 197.86 temperature 25 43200 > th dose dependent rect. 4 10
925 197.96 humidity 90 43200 > th dose independent rect. 12 15