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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0284900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.06 (0.0733) R2 : 0.431
β1 : 0.5 (0.266) R2dD : 0.00384 R2D : -0.00834
β2 : 1.55 (0.17) R2dC : 0.105 R2C : 0.0983
β3 : -3.23 (0.277) R2dE : 0.2 R2E : 0.0817
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -14.7 (1.19) R2dD*E : 0.218 R2D*E : 0.1
γ1 : -0.444 (0.16) R2dN8 : 0.0149 R2N8 : 0.0209
σ : 1.34
deviance : 825.43
__
_____
C
peak time of C : 11.3
E
wheather : wind
threshold : 6.683
memory length : 4312
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18.3
open length of G : 2.97

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
822.38 1.35 4.06 0.49 1.54 -3.24 -1.05 -14.7 -0.454 11.3 6.657 4315 18.4 2.96
980.8 1.46 4.06 0.623 1.64 -3.19 -1.54 -- -0.426 11.4 8.7 4316 18.5 3.02
825.43 1.34 4.06 0.5 1.55 -3.23 -- -14.7 -0.444 11.3 6.683 4312 18.3 2.97
979.45 1.46 4.06 0.226 1.53 -3.26 -- -- -0.447 10.9 8.7 4317 18.4 3.17
972.97 1.45 4.07 0.423 -- -3.11 -- -14.8 -0.453 -- 6.8 4318 18.3 2.97
1247.39 1.66 4 0.157 1.6 -- -0.982 -- -0.647 11.6 -- -- -- --
1250.95 1.66 4.01 0.12 1.61 -- -- -- -0.649 11.8 -- -- -- --
1125.95 1.56 4.06 -0.227 -- -3.3 -- -- -0.431 -- 8.701 4319 18.4 3.08
970.62 1.45 4.06 -- 1.66 -3.5 -- -- -0.474 11.4 8.719 4317 18.4 3.14
1413.91 1.76 4.04 0.0727 -- -- -- -- -0.669 -- -- -- -- --
1251.33 1.65 4.01 -- 1.61 -- -- -- -0.662 11.8 -- -- -- --
1075.45 1.53 4.04 -- -- -3.3 -- -- -0.396 -- 8.734 4319 18.5 2.62
1414.05 1.76 4.05 -- -- -- -- -- -0.677 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 857.61 wind 7 4320 < th dose independent rect. 18 3
4 864.35 wind 7 4320 > th dose independent rect. 18 3
6 867.54 wind 7 4320 > th dose dependent rect. 18 3
70 883.89 wind 9 4320 < th dose independent rect. 20 7
100 891.18 wind 5 1440 > th dose independent rect. 7 15
105 891.49 atmosphere 995 14400 < th dose independent rect. 15 4
149 893.51 atmosphere 995 14400 < th dose independent rect. 16 1
160 893.95 atmosphere 995 14400 < th dose dependent rect. 15 4
168 894.26 wind 5 1440 > th dose independent rect. 3 20
174 894.43 atmosphere 995 14400 > th dose independent rect. 8 12
175 894.50 atmosphere 995 14400 < th dose dependent rect. 16 1
177 894.73 atmosphere 995 14400 < th dose independent rect. 18 1
180 894.73 atmosphere 995 14400 < th dose dependent rect. 18 1
199 895.32 atmosphere 995 14400 > th dose independent rect. 8 5
205 895.70 atmosphere 995 14400 > th dose independent rect. 15 5
206 895.77 atmosphere 995 14400 > th dose independent rect. 10 10
210 895.85 radiation 1 14400 < th dose dependent rect. 23 5
213 895.98 atmosphere 995 14400 > th dose independent rect. 15 3
265 896.62 atmosphere 995 14400 > th dose independent rect. 12 8
282 897.01 humidity 90 1440 < th dose dependent rect. 3 1
296 897.54 atmosphere 995 14400 > th dose independent rect. 8 7
309 898.33 wind 5 1440 < th dose independent rect. 7 14
320 899.26 wind 5 1440 < th dose independent rect. 6 17
333 900.02 radiation 1 14400 < th dose dependent rect. 1 1
380 902.06 wind 5 1440 > th dose independent sin 0 NA
384 902.43 wind 5 1440 < th dose independent rect. 3 20
413 905.04 humidity 90 1440 < th dose dependent rect. 2 5
453 907.65 wind 5 1440 < th dose independent sin 0 NA
528 913.92 humidity 80 1440 < th dose independent rect. 22 1
529 914.00 wind 5 1440 > th dose dependent rect. 12 22
539 914.64 humidity 80 1440 > th dose independent rect. 6 1
596 918.47 radiation 1 14400 < th dose dependent rect. 19 8
599 918.56 wind 5 1440 > th dose independent rect. 11 23
600 918.62 wind 5 1440 > th dose independent rect. 20 23
627 920.00 wind 5 1440 > th dose dependent rect. 7 16
642 920.60 wind 5 1440 > th dose independent no NA NA
643 920.68 wind 5 1440 > th dose dependent rect. 15 19
669 921.89 wind 5 1440 > th dose independent rect. 15 23
743 925.48 wind 5 1440 > th dose independent rect. 17 23
756 926.01 wind 5 1440 > th dose dependent rect. 15 23
758 926.11 wind 5 1440 < th dose independent rect. 20 23
765 926.50 wind 5 1440 > th dose dependent rect. 8 1
768 926.62 atmosphere 995 14400 > th dose independent sin 4 NA
788 927.62 atmosphere 995 14400 < th dose dependent sin 0 NA
789 927.72 wind 7 4320 < th dose independent rect. 8 1
835 928.97 wind 5 1440 < th dose independent rect. 11 23
836 929.00 atmosphere 1005 14400 < th dose independent rect. 4 3
865 930.04 wind 5 1440 < th dose independent no NA NA
868 930.16 atmosphere 995 14400 < th dose independent sin 3 NA
874 930.35 atmosphere 995 14400 > th dose independent sin 23 NA
886 930.48 humidity 90 1440 < th dose dependent rect. 5 1
908 931.11 atmosphere 1005 14400 > th dose independent rect. 3 5
938 931.71 atmosphere 995 14400 < th dose independent sin 22 NA
956 932.32 wind 5 1440 > th dose dependent rect. 22 23
972 932.69 wind 5 1440 > th dose dependent no NA NA
987 932.89 atmosphere 1005 14400 > th dose independent rect. 5 1