Os06g0283400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Phosphatidylinositol 3- and 4-kinase, catalytic domain containing protein.
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Os06g0283400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Phosphatidylinositol 3- and 4-kinase, catalytic domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.79 | 0.378 | 12.2 | 1.01 | 2.18 | 0.601 | -0.403 | -0.204 | 0.167 | 22.9 | 19.4 | 87 | -- | -- |
| 64.94 | 0.375 | 12.2 | 1.04 | 2.18 | 0.621 | -0.343 | -- | 0.173 | 22.9 | 19.38 | 87 | -- | -- |
| 65.43 | 0.377 | 12.2 | 1.03 | 2.17 | 0.603 | -- | -0.115 | 0.169 | 22.9 | 19.39 | 86 | -- | -- |
| 65.38 | 0.377 | 12.2 | 1.05 | 2.18 | 0.634 | -- | -- | 0.175 | 22.9 | 19.3 | 87 | -- | -- |
| 320.6 | 0.834 | 12.2 | 0.956 | -- | 0.812 | -- | -0.192 | 0.0342 | -- | 21.82 | 806 | -- | -- |
| 76.46 | 0.41 | 12.2 | 1.23 | 2.09 | -- | -0.241 | -- | 0.268 | 22.8 | -- | -- | -- | -- |
| 76.7 | 0.41 | 12.2 | 1.24 | 2.09 | -- | -- | -- | 0.268 | 22.8 | -- | -- | -- | -- |
| 259.82 | 0.751 | 12.3 | 0.732 | -- | 1.36 | -- | -- | -0.354 | -- | 25.21 | 852 | -- | -- |
| 91.13 | 0.445 | 12.2 | -- | 2.22 | 1.01 | -- | -- | 0.0691 | 23 | 19.18 | 138 | -- | -- |
| 347.03 | 0.87 | 12.1 | 1.28 | -- | -- | -- | -- | 0.281 | -- | -- | -- | -- | -- |
| 117.04 | 0.506 | 12.2 | -- | 2.1 | -- | -- | -- | 0.131 | 22.8 | -- | -- | -- | -- |
| 271.88 | 0.768 | 12.3 | -- | -- | 1.65 | -- | -- | -0.393 | -- | 25.2 | 836 | -- | -- |
| 390.26 | 0.922 | 12.2 | -- | -- | -- | -- | -- | 0.139 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.20 | temperature | 20 | 90 | > th | dose independent | rect. | 18 | 10 |
| 12 | 53.93 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 10 |
| 34 | 56.30 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 9 |
| 37 | 56.70 | temperature | 20 | 90 | < th | dose independent | rect. | 22 | 8 |
| 39 | 56.83 | temperature | 20 | 10 | < th | dose independent | rect. | 22 | 8 |
| 60 | 57.33 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 10 |
| 64 | 57.40 | temperature | 20 | 10 | < th | dose independent | sin | 10 | NA |
| 72 | 57.51 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 11 |
| 75 | 57.53 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 13 |
| 112 | 57.83 | temperature | 20 | 30 | > th | dose independent | rect. | 19 | 17 |
| 125 | 58.03 | temperature | 20 | 90 | > th | dose independent | sin | 11 | NA |
| 137 | 58.19 | temperature | 20 | 90 | > th | dose independent | rect. | 7 | 21 |
| 141 | 58.22 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 14 |
| 151 | 58.27 | temperature | 20 | 10 | > th | dose independent | sin | 10 | NA |
| 245 | 59.04 | temperature | 25 | 90 | < th | dose dependent | sin | 10 | NA |
| 529 | 60.69 | temperature | 15 | 90 | > th | dose dependent | sin | 10 | NA |
| 666 | 61.42 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 2 |
| 682 | 61.51 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 2 |
| 709 | 61.68 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 3 |
| 717 | 61.70 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 1 |
| 865 | 62.32 | temperature | 20 | 10 | > th | dose independent | rect. | 24 | 12 |
| 892 | 62.43 | temperature | 20 | 10 | > th | dose independent | rect. | 22 | 14 |
| 993 | 62.81 | temperature | 20 | 90 | > th | dose independent | rect. | 23 | 13 |