Os06g0283300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein-serine/threonine kinase.
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Os06g0283300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein-serine/threonine kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.24 | 0.385 | 9.24 | 0.181 | 0.508 | 0.536 | -1.14 | 0.765 | -0.0643 | 12.4 | 29.7 | 1417 | -- | -- |
| 67.28 | 0.382 | 9.21 | 0.365 | 0.497 | 0.631 | -1.09 | -- | -0.0155 | 12.4 | 29.58 | 1416 | -- | -- |
| 71.97 | 0.395 | 9.24 | 0.0729 | 0.547 | 0.556 | -- | 1.02 | -0.0341 | 13.2 | 29.5 | 1542 | -- | -- |
| 71.75 | 0.395 | 9.21 | 0.332 | 0.589 | 0.746 | -- | -- | 0.0383 | 13.7 | 29.4 | 1714 | -- | -- |
| 88.77 | 0.439 | 9.23 | 0.178 | -- | 0.68 | -- | 0.497 | 0.0017 | -- | 29.2 | 2590 | -- | -- |
| 88.12 | 0.44 | 9.21 | 0.151 | 0.573 | -- | -1 | -- | -0.012 | 12.7 | -- | -- | -- | -- |
| 92.04 | 0.449 | 9.22 | 0.115 | 0.584 | -- | -- | -- | -0.0154 | 13.2 | -- | -- | -- | -- |
| 88.77 | 0.439 | 9.23 | 0.322 | -- | 0.727 | -- | -- | -0.0132 | -- | 29.4 | 2595 | -- | -- |
| 74.34 | 0.402 | 9.21 | -- | 0.59 | 0.678 | -- | -- | 0.0124 | 13.6 | 29.26 | 1718 | -- | -- |
| 113.13 | 0.497 | 9.23 | 0.0924 | -- | -- | -- | -- | -0.0273 | -- | -- | -- | -- | -- |
| 92.39 | 0.45 | 9.22 | -- | 0.582 | -- | -- | -- | -0.0282 | 13.2 | -- | -- | -- | -- |
| 89.82 | 0.441 | 9.19 | -- | -- | 0.703 | -- | -- | 0.0372 | -- | 28.5 | 1195 | -- | -- |
| 113.36 | 0.497 | 9.23 | -- | -- | -- | -- | -- | -0.0375 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.04 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 5 | 62.61 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 16 |
| 18 | 64.05 | temperature | 30.0 | 90 | < th | dose independent | rect. | 6 | 9 |
| 25 | 64.79 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 5 | 10 |
| 30 | 65.11 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 45 | 66.07 | temperature | 30.0 | 90 | < th | dose independent | rect. | 6 | 21 |
| 68 | 66.72 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 5 | 18 |
| 84 | 66.91 | wind | 3.0 | 90 | < th | dose independent | rect. | 3 | 2 |
| 90 | 66.99 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 6 | 21 |
| 92 | 67.01 | wind | 7.0 | 90 | < th | dose dependent | rect. | 3 | 2 |
| 101 | 67.14 | radiation | 40.0 | 270 | < th | dose independent | rect. | 5 | 20 |
| 112 | 67.35 | radiation | 40.0 | 270 | < th | dose independent | rect. | 5 | 9 |
| 123 | 67.42 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 22 |
| 126 | 67.44 | radiation | 20.0 | 270 | < th | dose independent | rect. | 5 | 20 |
| 133 | 67.48 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 7 | 17 |
| 151 | 67.53 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 2 |
| 152 | 67.53 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 2 |
| 179 | 67.55 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 180 | 67.56 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 198 | 67.58 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 18 | NA |
| 206 | 67.58 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 209 | 67.59 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 15 | 9 |
| 214 | 67.59 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 230 | 67.62 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 11 |
| 242 | 67.63 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 15 | 6 |
| 259 | 67.65 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 269 | 67.67 | temperature | 30.0 | 1440 | < th | dose independent | sin | 15 | NA |
| 279 | 67.68 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 14 | 19 |
| 311 | 67.71 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 13 | 11 |
| 312 | 67.71 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 13 | 13 |
| 315 | 67.71 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 354 | 67.74 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 358 | 67.74 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 11 | 22 |
| 365 | 67.75 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 366 | 67.75 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 11 | 15 |
| 396 | 67.77 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 400 | 67.77 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 14 | 19 |
| 483 | 67.85 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 536 | 67.88 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 7 | 17 |
| 537 | 67.88 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 7 | 19 |
| 543 | 67.88 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 9 | 15 |
| 549 | 67.89 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 8 | 15 |
| 569 | 67.90 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 596 | 67.91 | temperature | 30.0 | 1440 | < th | dose independent | no | NA | NA |
| 609 | 67.91 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 1 | 22 |
| 613 | 67.91 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 22 |
| 622 | 67.92 | temperature | 30.0 | 1440 | > th | dose independent | sin | 14 | NA |
| 690 | 67.94 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 6 | 21 |
| 720 | 67.98 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 2 |
| 747 | 68.01 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 2 |
| 749 | 68.01 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 2 |
| 750 | 68.01 | humidity | 50.0 | 90 | > th | dose independent | rect. | 3 | 2 |
| 753 | 68.01 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 2 |
| 754 | 68.01 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 3 | 2 |
| 756 | 68.01 | radiation | 20.0 | 90 | < th | dose independent | rect. | 3 | 2 |
| 759 | 68.01 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 22 |
| 761 | 68.02 | humidity | 70.0 | 90 | > th | dose independent | rect. | 6 | 21 |
| 762 | 68.02 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 2 |
| 766 | 68.03 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 11 | 22 |
| 767 | 68.03 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 769 | 68.03 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 3 | 2 |
| 795 | 68.06 | radiation | 1.0 | 90 | < th | dose independent | rect. | 3 | 2 |
| 803 | 68.08 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 831 | 68.13 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 851 | 68.14 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 19 |
| 867 | 68.16 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 1 | 15 |
| 874 | 68.17 | temperature | 30.0 | 1440 | > th | dose independent | no | NA | NA |
| 875 | 68.17 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 981 | 68.18 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 11 | 5 |