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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0279900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.01 (0.0337) R2 : 0.145
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.61 (0.186) R2dE : 0.142 R2E : 0.144
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0434 (0.0713) R2dN8 : 0.00091 R2N8 : 0.0029
σ : 0.633
deviance : 184.57
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 19.22
memory length : 18
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 12
open length of G : 1.17

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
182.78 0.63 3.01 -0.133 0.0841 1.65 -0.374 -1.71 -0.068 7.58 20 10 12 1
183.89 0.632 3 -0.0409 0.0822 1.59 -0.34 -- -0.0429 6.97 19.45 9 12 0.905
183.11 0.635 3.01 -0.141 0.0879 1.64 -- -1.78 -0.0672 8.95 20 10 12 1
184.22 0.632 3.01 -0.0574 0.0672 1.6 -- -- -0.0531 7.59 19.21 9 12 0.827
183.55 0.634 3.02 -0.142 -- 1.67 -- -1.77 -0.0656 -- 20 10 12 1
211.76 0.682 3.02 -0.0842 0.217 -- -0.0659 -- -0.12 10.9 -- -- -- --
211.78 0.681 3.02 -0.0867 0.217 -- -- -- -0.12 11 -- -- -- --
184.48 0.633 3.01 -0.0598 -- 1.61 -- -- -0.0502 -- 19.21 11 12 1.06
184.32 0.632 3.01 -- 0.0696 1.59 -- -- -0.0451 7.64 19.24 10 12 0.904
214.71 0.685 3.02 -0.0916 -- -- -- -- -0.121 -- -- -- -- --
211.98 0.681 3.02 -- 0.218 -- -- -- -0.11 11 -- -- -- --
184.57 0.633 3.01 -- -- 1.61 -- -- -0.0434 -- 19.22 18 12 1.17
214.94 0.684 3.02 -- -- -- -- -- -0.111 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 182.78 radiation 20 10 < th dose independent rect. 12 1
3 192.70 wind 1 10 < th dose dependent rect. 8 7
21 193.68 radiation 30 10 < th dose dependent rect. 12 1
29 194.38 wind 1 10 < th dose independent rect. 8 14
30 194.56 wind 1 10 < th dose independent sin 20 NA
31 194.65 humidity 80 10 < th dose independent rect. 5 1
36 194.65 humidity 80 10 < th dose dependent rect. 5 1
45 194.69 wind 1 10 < th dose independent rect. 8 7
49 194.75 wind 1 10 < th dose dependent sin 21 NA
92 196.15 wind 1 10 < th dose independent rect. 12 2
94 196.15 wind 1 10 < th dose dependent rect. 12 3
97 196.18 wind 1 90 < th dose independent rect. 12 1
99 196.21 wind 1 90 < th dose dependent rect. 12 2
143 196.44 wind 1 10 < th dose independent rect. 13 9
172 196.63 wind 1 90 < th dose independent rect. 12 9
183 196.71 wind 1 10 > th dose independent sin 20 NA
240 197.23 humidity 90 720 < th dose independent rect. 2 3
335 198.54 humidity 90 720 < th dose dependent rect. 24 6
355 198.96 humidity 70 270 > th dose independent rect. 11 1
372 199.08 humidity 90 720 < th dose independent rect. 24 6
385 199.31 radiation 1 10 < th dose dependent rect. 6 6
429 199.88 radiation 1 90 < th dose independent rect. 10 1
431 199.88 radiation 1 90 < th dose dependent rect. 10 1
439 200.01 radiation 1 10 < th dose independent rect. 6 6
452 200.16 atmosphere 995 4320 > th dose independent rect. 4 10
466 200.42 humidity 70 270 > th dose independent rect. 10 5
469 200.45 atmosphere 995 4320 > th dose independent rect. 8 6
472 200.50 atmosphere 995 4320 > th dose independent rect. 2 12
497 200.71 humidity 70 90 > th dose independent rect. 10 7
522 201.06 atmosphere 995 4320 > th dose independent rect. 12 5
524 201.08 radiation 10 720 < th dose dependent rect. 3 6
531 201.16 atmosphere 995 4320 < th dose dependent rect. 14 1
556 201.23 atmosphere 995 4320 < th dose independent rect. 14 1
574 201.30 atmosphere 995 4320 > th dose independent rect. 10 7
585 201.37 humidity 90 1440 < th dose dependent rect. 21 9
597 201.40 atmosphere 995 4320 > th dose independent rect. 15 1
606 201.44 radiation 10 720 < th dose independent rect. 2 7
612 201.47 radiation 10 720 < th dose dependent rect. 19 14
650 201.60 humidity 80 1440 > th dose independent rect. 5 1
684 201.74 radiation 10 720 < th dose independent rect. 19 14
753 201.88 atmosphere 995 4320 > th dose independent rect. 12 9
776 202.03 radiation 1 10 < th dose independent rect. 11 1
818 202.06 radiation 10 720 < th dose dependent rect. 5 3
847 202.16 atmosphere 995 4320 > th dose independent rect. 19 19
852 202.20 humidity 90 10 < th dose dependent rect. 24 6
859 202.22 humidity 70 10 > th dose independent rect. 11 1
867 202.23 radiation 1 4320 < th dose dependent rect. 23 1
875 202.26 radiation 40 270 < th dose dependent rect. 11 1
894 202.32 radiation 10 720 < th dose dependent sin 8 NA
901 202.36 radiation 30 270 < th dose independent rect. 11 1
930 202.45 radiation 10 720 > th dose independent rect. 7 2
966 202.56 humidity 70 90 > th dose independent rect. 10 21
969 202.57 wind 3 10 > th dose dependent rect. 6 1
981 202.61 humidity 60 270 > th dose dependent rect. 11 1
990 202.65 humidity 60 270 > th dose dependent rect. 10 3