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Os06g0278000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.96 (0.0468) R2 : 0.731
β1 : 6.6 (0.246) R2dD : 0.935 R2D : -0.602
β2 : 0.813 (0.118) R2dC : 0.0293 R2C : 0.02
β3 : -4.98 (0.192) R2dE : 0.493 R2E : 0.0773
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -20.8 (0.841) R2dD*E : 0.763 R2D*E : -0.58
γ1 : 1.69 (0.0988) R2dN8 : 0.226 R2N8 : 0.0821
σ : 0.863
deviance : 343.04
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C
peak time of C : 19.7
E
wheather : radiation
threshold : 0.1978
memory length : 4312
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.8
open length of G : 11.1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
351.74 0.881 9 6.64 0.888 -4.92 1.44 -20.7 1.66 20.4 0.2218 4318 17.9 11
730.06 1.26 8.98 6.85 0.893 -4.65 1.01 -- 1.19 20.1 7.437 17279 17.5 11.4
343.04 0.863 8.96 6.6 0.813 -4.98 -- -20.8 1.69 19.7 0.1978 4312 17.8 11.1
615.03 1.16 8.95 6.58 0.516 -4.82 -- -- 1.62 19.6 5.812 30215 17.7 11.4
369.3 0.895 8.95 6.57 -- -5.05 -- -20.6 1.62 -- 0.2101 4299 17.8 11
996.15 1.48 8.77 1.76 0.886 -- 2.05 -- 1.53 21.8 -- -- -- --
1011.08 1.49 8.77 1.69 0.902 -- -- -- 1.53 21.2 -- -- -- --
599.16 1.14 8.95 6.23 -- -5.27 -- -- 1.42 -- 7.041 30215 17.7 11.3
394.83 0.925 9.12 -- 1.09 -3.6 -- -- 0.246 19.9 0.67 47520 17.9 9.82
1058.21 1.52 8.75 1.69 -- -- -- -- 1.52 -- -- -- -- --
1086.31 1.54 8.82 -- 0.902 -- -- -- 1.34 21.3 -- -- -- --
397.3 0.928 9.18 -- -- -5.02 -- -- -0.407 -- 2.621 47520 17.3 8.73
1133.76 1.57 8.79 -- -- -- -- -- 1.33 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 312.70 precipitation 0.1 43200 > th dose independent rect. 3 3
2 313.00 precipitation 0.1 43200 < th dose independent rect. 3 3
3 313.00 precipitation 0.1 43200 < th dose dependent rect. 3 3
4 313.33 precipitation 0.1 43200 > th dose dependent rect. 2 4
15 317.97 humidity 80.0 43200 > th dose independent rect. 13 6
16 318.17 humidity 80.0 43200 > th dose independent rect. 14 4
22 320.63 humidity 80.0 43200 < th dose independent rect. 13 6
23 320.75 humidity 80.0 43200 < th dose independent rect. 14 4
30 322.29 precipitation 0.1 43200 > th dose dependent rect. 2 8
34 323.24 humidity 80.0 43200 < th dose independent rect. 9 10
35 323.25 humidity 80.0 43200 > th dose independent rect. 8 11
40 323.41 humidity 70.0 43200 > th dose dependent rect. 13 4
46 323.86 humidity 80.0 43200 < th dose independent rect. 16 1
51 324.27 humidity 70.0 43200 > th dose dependent rect. 13 2
101 328.90 humidity 80.0 43200 > th dose independent rect. 16 1
106 329.22 radiation 1.0 43200 > th dose independent rect. 18 12
114 330.08 humidity 90.0 43200 > th dose dependent rect. 7 1
147 333.19 humidity 90.0 43200 > th dose independent rect. 20 1
156 334.15 precipitation 0.1 43200 > th dose dependent rect. 23 8
157 334.36 humidity 80.0 43200 > th dose dependent rect. 18 1
161 334.69 radiation 1.0 43200 > th dose independent rect. 18 14
174 335.78 radiation 1.0 43200 < th dose independent rect. 18 12
179 336.09 radiation 1.0 43200 < th dose independent rect. 18 14
220 339.02 radiation 1.0 43200 > th dose independent rect. 18 18
226 339.12 radiation 1.0 43200 < th dose dependent rect. 18 12
236 339.60 humidity 80.0 43200 > th dose dependent sin 20 NA
240 339.85 humidity 80.0 43200 > th dose dependent rect. 8 13
262 340.59 radiation 1.0 43200 < th dose independent rect. 18 18
299 342.23 humidity 80.0 43200 > th dose independent sin 22 NA
306 342.40 radiation 1.0 43200 < th dose dependent rect. 22 8
308 342.41 radiation 1.0 43200 < th dose dependent rect. 4 2
310 342.46 radiation 1.0 43200 < th dose dependent rect. 2 4
311 342.46 radiation 1.0 43200 < th dose dependent rect. 24 6
323 342.65 precipitation 0.1 43200 > th dose independent rect. 23 8
331 343.01 radiation 1.0 43200 < th dose dependent rect. 18 8
332 343.03 precipitation 0.1 43200 < th dose independent rect. 23 8
333 343.03 precipitation 0.1 43200 < th dose dependent rect. 23 8
351 343.59 radiation 1.0 43200 > th dose independent sin 10 NA
360 343.88 radiation 1.0 43200 < th dose dependent rect. 18 3
361 343.92 radiation 1.0 43200 < th dose independent sin 10 NA
388 344.88 radiation 1.0 43200 > th dose independent rect. 17 2
406 345.39 radiation 1.0 43200 > th dose independent rect. 5 1
418 345.81 radiation 1.0 43200 < th dose independent rect. 5 1
422 346.06 radiation 1.0 43200 < th dose independent rect. 17 8
423 346.07 radiation 1.0 43200 < th dose independent rect. 17 4
427 346.10 radiation 1.0 43200 < th dose independent rect. 17 6
448 346.71 humidity 80.0 43200 < th dose independent sin 22 NA
450 346.78 radiation 1.0 43200 > th dose independent rect. 5 3
462 347.07 radiation 1.0 43200 < th dose independent rect. 5 3
478 347.30 radiation 1.0 43200 < th dose independent rect. 22 10
481 347.32 radiation 1.0 43200 < th dose independent rect. 24 8
485 347.34 radiation 1.0 43200 < th dose independent rect. 2 6
547 348.46 temperature 25.0 43200 < th dose dependent rect. 6 1
551 348.52 temperature 10.0 43200 > th dose dependent rect. 6 1
553 348.64 temperature 10.0 43200 > th dose dependent rect. 5 3
554 348.64 temperature 30.0 43200 < th dose dependent rect. 5 3
562 348.89 radiation 1.0 43200 < th dose dependent sin 12 NA
613 349.50 radiation 1.0 43200 < th dose dependent rect. 18 18
653 349.94 radiation 1.0 43200 < th dose independent rect. 7 23
686 350.38 radiation 1.0 43200 > th dose independent rect. 7 23
715 350.77 humidity 90.0 43200 < th dose independent rect. 13 11
805 351.96 temperature 10.0 43200 > th dose dependent rect. 14 1
883 352.71 radiation 1.0 43200 < th dose independent rect. 9 23
888 352.77 radiation 1.0 43200 < th dose independent rect. 4 21
889 352.78 radiation 1.0 43200 < th dose independent rect. 4 17
890 352.78 radiation 1.0 43200 < th dose independent rect. 24 21
891 352.78 radiation 1.0 43200 < th dose independent rect. 22 23
904 352.80 radiation 1.0 43200 < th dose independent no NA NA
927 352.81 radiation 1.0 43200 < th dose independent rect. 20 23
995 353.27 humidity 90.0 43200 > th dose independent rect. 6 19