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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0277600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.71 (0.0364) R2 : 0.316
β1 : 1.45 (0.148) R2dD : 0.189 R2D : -0.0443
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.18 (0.161) R2dE : 0.381 R2E : 0.129
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.229 (0.0824) R2dN8 : 0.0182 R2N8 : -0.0441
σ : 0.669
deviance : 206.33
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 10.2
memory length : 3725
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
193.26 0.653 4.67 1.67 0.54 -2.04 -0.0775 0.838 0.269 9.41 10.52 4442 -- --
194.05 0.649 4.7 1.53 0.541 -2.05 -0.0348 -- 0.226 9.54 11.17 4512 -- --
193.28 0.648 4.67 1.68 0.54 -2.05 -- 0.853 0.27 9.4 10.38 4456 -- --
193.91 0.649 4.7 1.48 0.54 -2.08 -- -- 0.217 9.43 10.3 4478 -- --
205.55 0.668 4.68 1.67 -- -2.16 -- 0.987 0.293 -- 10.6 3722 -- --
271.27 0.772 4.79 0.517 0.559 -- -0.051 -- -0.19 9.87 -- -- -- --
271.28 0.771 4.79 0.515 0.559 -- -- -- -0.19 9.85 -- -- -- --
206.33 0.669 4.71 1.45 -- -2.18 -- -- 0.229 -- 10.2 3725 -- --
229.27 0.705 4.75 -- 0.53 -1.62 -- -- -0.00153 9.68 -10.1 1559 -- --
289.98 0.796 4.81 0.509 -- -- -- -- -0.19 -- -- -- -- --
278.27 0.78 4.81 -- 0.558 -- -- -- -0.248 9.78 -- -- -- --
227.4 0.702 4.76 -- -- -1.99 -- -- 0.00237 -- -11.09 770 -- --
296.81 0.804 4.82 -- -- -- -- -- -0.247 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 186.03 temperature 15 720 > th dose dependent rect. 19 19
5 187.33 wind 9 43200 > th dose dependent rect. 17 13
7 187.99 temperature 30 720 < th dose dependent rect. 17 19
27 189.06 wind 9 43200 > th dose dependent rect. 17 8
40 189.62 wind 5 43200 > th dose dependent rect. 20 1
46 190.06 wind 9 43200 > th dose dependent rect. 20 3
50 190.15 wind 9 43200 > th dose independent rect. 20 1
55 190.31 wind 9 43200 < th dose independent rect. 20 1
70 190.69 wind 9 43200 > th dose independent rect. 18 12
79 191.02 wind 9 43200 > th dose dependent rect. 17 4
80 191.05 temperature 10 4320 > th dose dependent rect. 21 7
82 191.06 temperature 30 4320 < th dose dependent rect. 21 7
83 191.09 temperature 10 4320 > th dose dependent rect. 24 1
88 191.17 temperature 10 4320 > th dose dependent rect. 18 10
95 191.23 temperature 30 4320 < th dose dependent rect. 1 1
102 191.27 temperature 10 4320 > th dose dependent rect. 24 4
103 191.27 wind 9 43200 > th dose dependent rect. 19 5
105 191.29 temperature 30 4320 < th dose dependent rect. 24 4
128 191.40 temperature 30 4320 < th dose dependent rect. 3 1
135 191.42 temperature 10 4320 > th dose dependent rect. 3 1
144 191.46 temperature 10 4320 > th dose dependent rect. 21 12
150 191.49 temperature 30 4320 < th dose dependent rect. 21 12
151 191.50 temperature 10 4320 > th dose dependent sin 12 NA
153 191.50 temperature 10 4320 > th dose dependent rect. 17 15
202 191.66 wind 9 43200 < th dose independent rect. 18 11
208 191.69 temperature 30 4320 < th dose dependent sin 11 NA
390 192.34 wind 9 43200 < th dose independent rect. 18 7
399 192.38 wind 9 43200 > th dose independent rect. 18 6
507 192.74 temperature 10 720 > th dose dependent sin 9 NA
631 193.04 temperature 10 720 > th dose dependent rect. 1 23
795 193.49 temperature 10 4320 > th dose dependent no NA NA
832 193.56 temperature 10 4320 > th dose dependent rect. 6 23
862 193.62 temperature 10 4320 > th dose dependent rect. 24 23
884 193.67 temperature 30 4320 < th dose dependent rect. 6 1
915 193.76 temperature 10 4320 > th dose dependent rect. 3 23
920 193.78 temperature 10 4320 > th dose dependent rect. 6 1
939 193.83 temperature 30 720 < th dose dependent sin 9 NA
950 193.87 wind 9 43200 < th dose independent rect. 18 4
984 193.94 temperature 10 720 > th dose dependent no NA NA