Os06g0276300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NB-ARC domain containing protein.
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Os06g0276300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NB-ARC domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 177.22 | 0.625 | 8.05 | 2.33 | 1.24 | 1.69 | 0.316 | 3.22 | 0.584 | 3.68 | 6.962 | 4363 | -- | -- |
| 183.17 | 0.63 | 8.11 | 2.49 | 1.22 | 1.21 | 0.309 | -- | 0.61 | 3.37 | 6.7 | 4473 | -- | -- |
| 177.5 | 0.621 | 8.05 | 2.33 | 1.24 | 1.69 | -- | 3.23 | 0.583 | 3.61 | 6.955 | 4363 | -- | -- |
| 182.92 | 0.63 | 8.11 | 2.39 | 1.24 | 1.28 | -- | -- | 0.564 | 3.45 | 6.602 | 4462 | -- | -- |
| 248.1 | 0.734 | 8.03 | 2.19 | -- | 1.88 | -- | 3.26 | 0.696 | -- | 6.9 | 4750 | -- | -- |
| 210.42 | 0.68 | 8.12 | 2.84 | 1.28 | -- | 0.353 | -- | 0.589 | 3.35 | -- | -- | -- | -- |
| 210.78 | 0.68 | 8.12 | 2.83 | 1.28 | -- | -- | -- | 0.587 | 3.27 | -- | -- | -- | -- |
| 258.19 | 0.748 | 8.12 | 2.31 | -- | 1.52 | -- | -- | 0.625 | -- | 6.653 | 4750 | -- | -- |
| 295.1 | 0.8 | 8.11 | -- | 1.33 | 2.24 | -- | -- | 0.646 | 3.22 | 6.221 | 5850 | -- | -- |
| 303.69 | 0.814 | 8.12 | 2.88 | -- | -- | -- | -- | 0.621 | -- | -- | -- | -- | -- |
| 421.92 | 0.961 | 8.19 | -- | 1.34 | -- | -- | -- | 0.272 | 3.27 | -- | -- | -- | -- |
| 331.15 | 0.848 | 8.27 | -- | -- | 2.21 | -- | -- | -0.127 | -- | 8.7 | 47520 | -- | -- |
| 523.2 | 1.07 | 8.19 | -- | -- | -- | -- | -- | 0.301 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 166.55 | humidity | 90 | 90 | > th | dose independent | rect. | 9 | 1 |
| 2 | 166.55 | humidity | 90 | 90 | > th | dose dependent | rect. | 9 | 1 |
| 3 | 173.26 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 5 |
| 5 | 173.60 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 5 |
| 9 | 175.40 | wind | 5 | 4320 | > th | dose dependent | rect. | 18 | 2 |
| 12 | 175.69 | wind | 7 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 14 | 176.22 | wind | 7 | 4320 | < th | dose independent | rect. | 3 | 17 |
| 15 | 176.24 | wind | 7 | 4320 | < th | dose independent | rect. | 12 | 8 |
| 30 | 176.52 | wind | 7 | 4320 | > th | dose independent | rect. | 12 | 8 |
| 37 | 176.61 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 44 | 176.76 | wind | 7 | 4320 | > th | dose independent | rect. | 3 | 17 |
| 47 | 176.79 | wind | 7 | 4320 | > th | dose independent | rect. | 24 | 20 |
| 52 | 176.82 | wind | 7 | 4320 | < th | dose independent | rect. | 12 | 19 |
| 56 | 176.91 | wind | 7 | 4320 | > th | dose dependent | rect. | 15 | 4 |
| 57 | 176.92 | wind | 7 | 4320 | > th | dose independent | rect. | 12 | 19 |
| 93 | 177.14 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 23 |
| 116 | 177.31 | wind | 7 | 4320 | < th | dose independent | sin | 19 | NA |
| 134 | 177.39 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 23 |
| 179 | 177.54 | wind | 7 | 4320 | > th | dose independent | sin | 18 | NA |
| 185 | 177.55 | wind | 7 | 4320 | < th | dose independent | no | NA | NA |
| 209 | 177.66 | wind | 7 | 4320 | < th | dose independent | rect. | 18 | 23 |
| 283 | 177.88 | wind | 7 | 4320 | > th | dose independent | no | NA | NA |
| 298 | 177.92 | wind | 7 | 4320 | > th | dose independent | rect. | 18 | 23 |
| 300 | 177.93 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 16 |
| 309 | 177.95 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 13 |
| 339 | 178.03 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 16 |
| 353 | 178.07 | wind | 5 | 4320 | > th | dose dependent | rect. | 1 | 19 |
| 362 | 178.12 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 13 |
| 423 | 178.38 | wind | 5 | 4320 | > th | dose dependent | rect. | 18 | 22 |
| 433 | 178.43 | wind | 5 | 4320 | > th | dose dependent | rect. | 15 | 23 |
| 493 | 178.62 | wind | 5 | 4320 | > th | dose dependent | rect. | 10 | 22 |
| 519 | 178.74 | wind | 5 | 4320 | > th | dose dependent | sin | 3 | NA |
| 566 | 178.95 | wind | 5 | 4320 | > th | dose dependent | rect. | 21 | 19 |
| 582 | 179.04 | wind | 5 | 4320 | > th | dose dependent | no | NA | NA |
| 584 | 179.05 | wind | 5 | 4320 | > th | dose dependent | rect. | 1 | 15 |
| 598 | 179.15 | wind | 5 | 4320 | > th | dose dependent | rect. | 7 | 23 |
| 712 | 179.89 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 727 | 180.05 | wind | 5 | 4320 | > th | dose dependent | rect. | 10 | 10 |
| 743 | 180.16 | wind | 5 | 4320 | > th | dose dependent | rect. | 10 | 14 |
| 765 | 180.31 | wind | 5 | 4320 | > th | dose dependent | sin | 17 | NA |
| 829 | 180.62 | wind | 7 | 4320 | > th | dose dependent | rect. | 15 | 16 |