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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0274800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Peroxidase 11 precursor (EC 1.11.1.7) (Atperox P11) (ATP23a/ATP23b).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.21 (0.0537) R2 : 0.222
β1 : 1.44 (0.198) R2dD : 0.0952 R2D : 0.008
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.349 (0.258) R2dE : 0.00732 R2E : -0.0371
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -7.11 (1.02) R2dD*E : 0.159 R2D*E : 0.0332
γ1 : 0.846 (0.121) R2dN8 : 0.128 R2N8 : 0.0419
σ : 0.981
deviance : 443.65
__
_____
C
peak time of C : --
E
wheather : precipitation
threshold : 0.3028
memory length : 11202
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
442.38 0.988 5.15 1.58 0.0221 0.13 1 -6.08 0.881 21.4 -0.3457 11193 -- --
476.69 1.02 5.09 1.56 0.0657 -0.635 -1.85 -- 0.74 8.6 0.5985 6990 -- --
444.19 0.982 5.18 1.51 0.0526 0.345 -- -6.93 0.871 5.12 0.2959 11202 -- --
469.36 1.01 5.16 1.71 0.291 -1.25 -- -- 0.614 16 0.9811 16999 -- --
443.65 0.981 5.21 1.44 -- 0.349 -- -7.11 0.846 -- 0.3028 11202 -- --
503.44 1.05 5.11 1.09 0.0327 -- 0.977 -- 0.765 21.1 -- -- -- --
506.72 1.05 5.11 1.06 0.0427 -- -- -- 0.765 18.3 -- -- -- --
466.03 1.01 5.15 1.66 -- -1.18 -- -- 0.641 -- 1 17075 -- --
521.11 1.06 5.15 -- 0.0224 -0.77 -- -- 0.562 2.31 0.8077 4193 -- --
506.82 1.05 5.11 1.06 -- -- -- -- 0.764 -- -- -- -- --
536.22 1.08 5.13 -- 0.0319 -- -- -- 0.647 20.2 -- -- -- --
521.14 1.06 5.15 -- -- -0.769 -- -- 0.562 -- 0.8093 4193 -- --
536.27 1.08 5.13 -- -- -- -- -- 0.647 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 426.44 humidity 70.0 14400 < th dose independent rect. 7 1
12 434.00 humidity 70.0 14400 < th dose dependent rect. 7 1
13 434.61 humidity 70.0 14400 > th dose independent rect. 6 2
14 434.75 humidity 70.0 14400 > th dose independent rect. 2 6
17 435.09 humidity 70.0 14400 > th dose independent rect. 23 9
31 435.82 precipitation 0.1 14400 > th dose dependent rect. 6 20
33 435.93 precipitation 0.1 14400 > th dose dependent rect. 7 14
34 435.95 wind 1.0 43200 < th dose independent rect. 5 5
38 436.14 precipitation 0.1 14400 > th dose dependent rect. 6 16
48 436.68 precipitation 0.1 14400 < th dose independent rect. 7 12
49 436.68 precipitation 0.1 14400 < th dose dependent rect. 7 12
50 436.69 precipitation 0.1 14400 > th dose independent rect. 7 12
57 436.90 precipitation 0.1 43200 > th dose dependent rect. 19 1
58 437.02 atmosphere 1010.0 14400 < th dose independent rect. 5 1
66 437.21 wind 1.0 43200 < th dose independent rect. 6 3
67 437.28 humidity 60.0 14400 > th dose independent rect. 9 2
68 437.31 precipitation 0.1 14400 > th dose dependent sin 21 NA
69 437.32 humidity 60.0 14400 < th dose independent rect. 9 2
70 437.38 humidity 90.0 43200 < th dose independent rect. 23 1
78 437.47 atmosphere 1010.0 14400 > th dose independent rect. 5 1
79 437.52 precipitation 0.1 14400 > th dose independent rect. 7 14
82 437.55 precipitation 0.1 14400 < th dose independent rect. 12 6
83 437.55 precipitation 0.1 14400 < th dose independent rect. 7 14
84 437.55 precipitation 0.1 14400 < th dose dependent rect. 12 6
85 437.55 precipitation 0.1 14400 < th dose dependent rect. 7 14
88 437.59 precipitation 0.1 14400 > th dose independent rect. 12 6
122 438.20 precipitation 0.1 14400 < th dose independent rect. 14 4
123 438.20 precipitation 0.1 14400 < th dose dependent rect. 14 4
126 438.25 precipitation 0.1 14400 > th dose independent rect. 14 4
142 438.42 humidity 90.0 43200 < th dose independent rect. 20 6
147 438.52 humidity 60.0 14400 > th dose independent rect. 20 15
150 438.55 humidity 60.0 14400 > th dose independent rect. 6 5
151 438.55 humidity 60.0 14400 > th dose independent rect. 2 9
157 438.60 humidity 60.0 14400 > th dose independent rect. 23 12
163 438.63 precipitation 0.1 14400 > th dose dependent rect. 12 7
176 438.80 precipitation 0.1 14400 > th dose independent sin 21 NA
177 438.81 precipitation 0.1 14400 < th dose independent sin 21 NA
179 438.81 precipitation 0.1 14400 < th dose dependent sin 21 NA
231 439.33 precipitation 0.1 14400 > th dose independent rect. 6 20
232 439.33 precipitation 0.1 14400 < th dose independent rect. 6 20
233 439.33 precipitation 0.1 14400 < th dose dependent rect. 6 20
250 439.46 humidity 60.0 14400 > th dose independent rect. 15 1
266 439.70 humidity 60.0 14400 < th dose independent rect. 20 15
269 439.77 precipitation 0.1 43200 < th dose independent rect. 19 1
270 439.77 precipitation 0.1 43200 < th dose dependent rect. 19 1
276 439.84 precipitation 0.1 14400 > th dose dependent rect. 14 8
277 439.85 precipitation 0.1 14400 > th dose dependent rect. 14 12
287 439.86 precipitation 0.1 14400 > th dose dependent rect. 14 5
310 440.12 precipitation 0.1 14400 > th dose dependent rect. 14 10
327 440.22 humidity 60.0 14400 > th dose independent rect. 15 20
337 440.31 precipitation 0.1 14400 > th dose dependent rect. 14 3
357 440.60 humidity 90.0 43200 < th dose independent rect. 19 13
369 440.75 precipitation 0.1 43200 > th dose independent rect. 19 1
394 440.88 humidity 60.0 14400 < th dose independent rect. 14 21
401 440.93 humidity 60.0 14400 < th dose independent rect. 15 1
445 441.55 humidity 90.0 43200 > th dose independent rect. 5 1
479 441.80 atmosphere 1010.0 14400 > th dose dependent rect. 6 1
498 441.98 atmosphere 1015.0 14400 > th dose dependent rect. 3 2
525 442.30 humidity 70.0 14400 < th dose dependent rect. 21 13
548 442.46 wind 1.0 43200 > th dose independent rect. 6 2
559 442.57 wind 1.0 43200 > th dose independent rect. 5 5
572 442.72 humidity 90.0 43200 < th dose independent rect. 5 1
596 442.86 humidity 90.0 43200 > th dose independent rect. 20 6
617 443.02 humidity 90.0 43200 > th dose independent rect. 20 11
619 443.02 humidity 70.0 14400 < th dose dependent rect. 9 1
623 443.05 humidity 80.0 43200 > th dose dependent rect. 18 6
629 443.08 atmosphere 1010.0 14400 > th dose dependent rect. 8 1
633 443.11 precipitation 0.1 14400 > th dose dependent rect. 20 23
634 443.12 humidity 90.0 43200 < th dose independent sin 10 NA
635 443.12 humidity 60.0 14400 < th dose independent sin 6 NA
638 443.13 humidity 60.0 14400 < th dose independent rect. 8 8
678 443.33 precipitation 0.1 14400 > th dose dependent rect. 14 23
687 443.38 humidity 80.0 43200 > th dose dependent rect. 18 19
730 443.57 humidity 60.0 14400 > th dose independent rect. 8 9
758 443.72 humidity 90.0 43200 > th dose dependent rect. 1 1
763 443.74 precipitation 0.1 14400 > th dose dependent rect. 1 22
773 443.80 humidity 60.0 14400 > th dose independent rect. 1 16
805 443.94 humidity 60.0 14400 > th dose independent sin 6 NA
823 444.03 precipitation 0.1 14400 > th dose dependent no NA NA
849 444.19 precipitation 0.1 14400 > th dose dependent rect. 11 23
862 444.21 humidity 90.0 43200 > th dose dependent rect. 1 5
899 444.35 humidity 90.0 43200 > th dose independent rect. 4 3
909 444.38 precipitation 0.1 14400 > th dose dependent rect. 17 23