Os06g0274300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine rich repeat, N-terminal domain containing protein.
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Os06g0274300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine rich repeat, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.89 | 0.378 | 10.7 | -0.313 | 0.757 | -0.473 | 0.0244 | 9.75 | -0.111 | 9.82 | 29.19 | 2631 | -- | -- |
| 69.42 | 0.388 | 10.9 | -2.11 | 0.764 | 0.741 | 0.245 | -- | -0.258 | 9.67 | 28.02 | 4242 | -- | -- |
| 64.88 | 0.375 | 10.7 | -0.349 | 0.757 | -0.458 | -- | 9.69 | -0.118 | 9.81 | 29.27 | 2615 | -- | -- |
| 68.76 | 0.386 | 10.9 | -2.09 | 0.776 | 0.739 | -- | -- | -0.187 | 9.72 | 29.6 | 4026 | -- | -- |
| 98.32 | 0.462 | 10.7 | -0.217 | -- | -0.547 | -- | 9.65 | -0.111 | -- | 28.96 | 2805 | -- | -- |
| 87.29 | 0.438 | 10.9 | -1.91 | 0.738 | -- | -0.0865 | -- | -0.303 | 9.44 | -- | -- | -- | -- |
| 87.32 | 0.438 | 10.9 | -1.91 | 0.738 | -- | -- | -- | -0.303 | 9.43 | -- | -- | -- | -- |
| 100.19 | 0.466 | 10.9 | -2.13 | -- | 0.475 | -- | -- | -0.413 | -- | 34 | 7347 | -- | -- |
| 107.76 | 0.483 | 10.9 | -- | 0.733 | -1.08 | -- | -- | -0.298 | 9.67 | 35.43 | 47520 | -- | -- |
| 119.3 | 0.51 | 10.9 | -1.91 | -- | -- | -- | -- | -0.301 | -- | -- | -- | -- | -- |
| 183.5 | 0.634 | 10.9 | -- | 0.741 | -- | -- | -- | -0.0906 | 9.63 | -- | -- | -- | -- |
| 139.59 | 0.55 | 10.9 | -- | -- | -1.1 | -- | -- | -0.281 | -- | 35.41 | 47520 | -- | -- |
| 216.01 | 0.686 | 10.9 | -- | -- | -- | -- | -- | -0.0884 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 64.84 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 16 |
| 2 | 65.00 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 16 | 65.11 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 21 | 65.44 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 3 |
| 48 | 65.65 | temperature | 30 | 1440 | > th | dose independent | sin | 7 | NA |
| 51 | 65.69 | temperature | 30 | 4320 | < th | dose independent | rect. | 10 | 2 |
| 53 | 65.74 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 10 |
| 54 | 65.74 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 59 | 65.76 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 61 | 65.76 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 18 |
| 64 | 65.78 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 19 |
| 66 | 65.79 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 21 |
| 68 | 65.80 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 16 |
| 78 | 65.87 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 23 |
| 79 | 65.88 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 23 |
| 83 | 65.91 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 23 |
| 88 | 65.95 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 96 | 65.96 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 19 |
| 97 | 65.97 | temperature | 30 | 4320 | > th | dose independent | rect. | 10 | 8 |
| 99 | 65.97 | temperature | 30 | 4320 | < th | dose independent | rect. | 10 | 8 |
| 131 | 65.98 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 14 |
| 139 | 65.98 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 20 |
| 174 | 65.99 | temperature | 30 | 4320 | < th | dose independent | rect. | 2 | 19 |
| 175 | 65.99 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 19 |
| 194 | 66.00 | temperature | 30 | 1440 | < th | dose independent | sin | 7 | NA |
| 195 | 66.00 | temperature | 30 | 4320 | < th | dose independent | sin | 1 | NA |
| 201 | 66.00 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 245 | 66.00 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 23 |
| 252 | 66.01 | temperature | 30 | 4320 | < th | dose independent | sin | 23 | NA |
| 308 | 66.02 | temperature | 30 | 4320 | > th | dose independent | sin | 23 | NA |
| 312 | 66.02 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |
| 509 | 66.08 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 627 | 66.16 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 630 | 66.16 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 631 | 66.17 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 3 |
| 632 | 66.17 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 5 |
| 641 | 66.18 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 5 |
| 689 | 66.20 | temperature | 30 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 690 | 66.20 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 3 |
| 700 | 66.23 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 722 | 66.25 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 8 |
| 725 | 66.26 | humidity | 60 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 732 | 66.26 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 8 |
| 744 | 66.26 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 16 |
| 762 | 66.27 | humidity | 50 | 14400 | > th | dose independent | rect. | 17 | 17 |
| 821 | 66.31 | temperature | 30 | 4320 | > th | dose dependent | rect. | 17 | 21 |
| 828 | 66.32 | temperature | 30 | 4320 | > th | dose dependent | sin | 1 | NA |
| 923 | 66.34 | temperature | 25 | 4320 | > th | dose dependent | rect. | 3 | 4 |
| 942 | 66.35 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 6 |
| 943 | 66.35 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 8 |
| 960 | 66.36 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 15 |
| 961 | 66.36 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 17 |