Os06g0274200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to H/ACA ribonucleoprotein complex subunit 2 (H/ACA snoRNP protein NHP2) (High mobility group-like nuclear protein 2).
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Os06g0274200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to H/ACA ribonucleoprotein complex subunit 2 (H/ACA snoRNP protein NHP2) (High mobility group-like nuclear protein 2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 183.45 | 0.636 | 10.9 | 0.925 | 3.21 | -2.09 | 1.23 | -1.46 | 0.00542 | 15.8 | 31.78 | 99 | 4.88 | 14.4 |
| 185.99 | 0.635 | 10.9 | 0.839 | 3.21 | -1.99 | 0.653 | -- | -0.0168 | 15.8 | 32.16 | 94 | 4.77 | 14.7 |
| 186.29 | 0.636 | 10.9 | 0.873 | 3.19 | -2.08 | -- | -0.676 | 0.00202 | 15.8 | 31.9 | 101 | 4.72 | 14.6 |
| 186.82 | 0.637 | 10.9 | 0.792 | 3.25 | -2.11 | -- | -- | 0.0061 | 15.7 | 32.78 | 121 | 4.38 | 14.7 |
| 491.78 | 1.04 | 10.8 | 0.907 | -- | -2.71 | -- | -2.55 | -0.0696 | -- | 32.83 | 33 | 0.0166 | 15.6 |
| 235.46 | 0.719 | 10.9 | 1.12 | 2.99 | -- | 1.52 | -- | 0.115 | 16.7 | -- | -- | -- | -- |
| 241.51 | 0.728 | 10.9 | 1.13 | 3 | -- | -- | -- | 0.123 | 16.7 | -- | -- | -- | -- |
| 499.68 | 1.04 | 10.9 | 1.01 | -- | -2.55 | -- | -- | -0.0854 | -- | 31.58 | 33 | 0.00896 | 15.5 |
| 203.56 | 0.665 | 10.9 | -- | 3.17 | -2.24 | -- | -- | -0.0627 | 15.6 | 32.37 | 133 | 4.23 | 14.9 |
| 718.09 | 1.25 | 10.8 | 1.01 | -- | -- | -- | -- | 0.0445 | -- | -- | -- | -- | -- |
| 274.97 | 0.776 | 10.9 | -- | 2.97 | -- | -- | -- | -0.00266 | 16.7 | -- | -- | -- | -- |
| 502.86 | 1.04 | 10.9 | -- | -- | -2.69 | -- | -- | -0.258 | -- | 30.35 | 20 | 0.0103 | 15.5 |
| 745.14 | 1.27 | 10.9 | -- | -- | -- | -- | -- | -0.0678 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 186.76 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 2 | 186.80 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 10 | 189.47 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 23 | 190.82 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 19 |
| 24 | 190.87 | temperature | 10 | 90 | > th | dose dependent | sin | 1 | NA |
| 43 | 191.94 | temperature | 30 | 90 | < th | dose dependent | sin | 1 | NA |
| 53 | 192.27 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 58 | 192.58 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 13 |
| 63 | 192.72 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 14 |
| 148 | 194.79 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 10 |
| 188 | 195.72 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 237 | 196.95 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 11 |
| 285 | 197.92 | temperature | 15 | 90 | > th | dose dependent | rect. | 24 | 14 |
| 332 | 199.01 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 355 | 199.31 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 14 |
| 388 | 199.76 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 405 | 200.07 | temperature | 30 | 90 | < th | dose independent | rect. | 4 | 15 |
| 423 | 200.23 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 433 | 200.33 | temperature | 25 | 270 | > th | dose dependent | sin | 6 | NA |
| 444 | 200.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 9 |
| 519 | 201.13 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 2 |
| 536 | 201.23 | temperature | 20 | 30 | > th | dose dependent | rect. | 24 | 23 |
| 548 | 201.39 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 559 | 201.48 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 572 | 201.59 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 606 | 201.89 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 20 |
| 641 | 202.26 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 22 |
| 711 | 202.71 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 730 | 202.82 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 21 |
| 735 | 202.85 | humidity | 80 | 43200 | < th | dose dependent | rect. | 20 | 12 |
| 758 | 203.01 | wind | 3 | 43200 | < th | dose dependent | rect. | 7 | 3 |
| 767 | 203.05 | humidity | 60 | 90 | > th | dose dependent | rect. | 5 | 14 |
| 821 | 203.36 | humidity | 70 | 90 | > th | dose independent | rect. | 4 | 15 |
| 825 | 203.39 | temperature | 20 | 90 | > th | dose dependent | rect. | 24 | 17 |
| 879 | 203.64 | humidity | 80 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 883 | 203.65 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 889 | 203.67 | humidity | 80 | 43200 | < th | dose dependent | rect. | 23 | 9 |
| 892 | 203.68 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 12 |
| 907 | 203.73 | temperature | 30 | 90 | < th | dose dependent | rect. | 10 | 23 |
| 920 | 203.79 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 17 |
| 950 | 203.89 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 11 |
| 980 | 204.06 | humidity | 80 | 43200 | > th | dose independent | rect. | 4 | 2 |