Os06g0274000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Heat shock factor binding protein 2.
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Os06g0274000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Heat shock factor binding protein 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.53 | 0.213 | 11.1 | -0.0937 | 0.583 | -0.674 | -0.0277 | -0.122 | 0.0279 | 21 | 18.4 | 4274 | -- | -- |
| 20.52 | 0.211 | 11.1 | -0.0942 | 0.577 | -0.65 | -0.0176 | -- | 0.0296 | 20.9 | 18.49 | 4077 | -- | -- |
| 20.5 | 0.211 | 11.1 | -0.0839 | 0.578 | -0.687 | -- | -0.134 | 0.0304 | 20.9 | 18.42 | 4077 | -- | -- |
| 20.52 | 0.211 | 11.1 | -0.0939 | 0.577 | -0.649 | -- | -- | 0.0283 | 20.9 | 18.47 | 4077 | -- | -- |
| 38.69 | 0.29 | 11.1 | -0.0876 | -- | -0.754 | -- | -0.0632 | 0.0318 | -- | 18.44 | 3642 | -- | -- |
| 26.35 | 0.241 | 11.1 | 0.264 | 0.574 | -- | 0.0185 | -- | 0.162 | 21.1 | -- | -- | -- | -- |
| 26.35 | 0.24 | 11.1 | 0.263 | 0.574 | -- | -- | -- | 0.162 | 21.1 | -- | -- | -- | -- |
| 38.68 | 0.29 | 11.1 | -0.102 | -- | -0.746 | -- | -- | 0.0201 | -- | 18.44 | 3642 | -- | -- |
| 20.59 | 0.211 | 11.1 | -- | 0.572 | -0.645 | -- | -- | 0.0481 | 21.1 | 18.5 | 3373 | -- | -- |
| 45.35 | 0.315 | 11.1 | 0.265 | -- | -- | -- | -- | 0.159 | -- | -- | -- | -- | -- |
| 28.18 | 0.248 | 11.1 | -- | 0.574 | -- | -- | -- | 0.132 | 21.1 | -- | -- | -- | -- |
| 38.86 | 0.29 | 11.1 | -- | -- | -0.674 | -- | -- | 0.045 | -- | 18.5 | 3640 | -- | -- |
| 47.2 | 0.321 | 11.1 | -- | -- | -- | -- | -- | 0.129 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.11 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 2 | 20.28 | humidity | 50 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 3 | 20.39 | humidity | 50 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 8 | 20.52 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 11 | 20.53 | humidity | 60 | 43200 | < th | dose dependent | rect. | 23 | 10 |
| 19 | 20.68 | humidity | 50 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 21 | 20.69 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 23 | 20.70 | humidity | 50 | 43200 | > th | dose independent | rect. | 2 | 7 |
| 27 | 20.71 | humidity | 50 | 43200 | > th | dose independent | rect. | 24 | 9 |
| 29 | 20.71 | radiation | 10 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 53 | 20.78 | humidity | 50 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 57 | 20.79 | humidity | 50 | 43200 | < th | dose dependent | rect. | 16 | 21 |
| 60 | 20.80 | humidity | 50 | 43200 | > th | dose independent | rect. | 21 | 13 |
| 61 | 20.80 | humidity | 80 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 78 | 20.83 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 80 | 20.83 | humidity | 50 | 43200 | < th | dose dependent | sin | 9 | NA |
| 99 | 20.86 | temperature | 20 | 4320 | < th | dose dependent | rect. | 23 | 2 |
| 102 | 20.87 | humidity | 50 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 103 | 20.87 | humidity | 50 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 111 | 20.88 | humidity | 50 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 112 | 20.88 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 4 |
| 138 | 20.92 | humidity | 60 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 150 | 20.92 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 152 | 20.93 | humidity | 50 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 162 | 20.94 | humidity | 50 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 173 | 20.94 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 175 | 20.94 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 18 | 4 |
| 184 | 20.95 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 212 | 20.96 | humidity | 50 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 266 | 20.98 | humidity | 50 | 43200 | > th | dose independent | sin | 1 | NA |
| 283 | 20.98 | radiation | 10 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 290 | 20.98 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 9 |
| 296 | 20.99 | humidity | 60 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 316 | 20.99 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 373 | 21.00 | humidity | 50 | 43200 | < th | dose dependent | sin | 3 | NA |
| 389 | 21.01 | humidity | 50 | 43200 | < th | dose independent | sin | 1 | NA |
| 402 | 21.01 | radiation | 10 | 43200 | < th | dose independent | rect. | 17 | 13 |
| 404 | 21.01 | humidity | 50 | 43200 | < th | dose dependent | sin | 1 | NA |
| 426 | 21.02 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 4 |
| 582 | 21.04 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 659 | 21.05 | radiation | 20 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 782 | 21.06 | radiation | 20 | 4320 | < th | dose independent | rect. | 22 | 10 |
| 815 | 21.06 | humidity | 50 | 43200 | < th | dose dependent | no | NA | NA |
| 867 | 21.07 | humidity | 50 | 43200 | > th | dose independent | no | NA | NA |
| 869 | 21.07 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 933 | 21.07 | temperature | 20 | 4320 | < th | dose dependent | rect. | 18 | 9 |
| 954 | 21.07 | humidity | 50 | 43200 | < th | dose dependent | rect. | 11 | 23 |
| 959 | 21.08 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 961 | 21.08 | radiation | 10 | 43200 | < th | dose independent | rect. | 17 | 7 |
| 991 | 21.08 | humidity | 50 | 43200 | > th | dose independent | rect. | 11 | 23 |
| 992 | 21.08 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 23 |